Serratia odorifera: NCTC11214_01105
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Entry
NCTC11214_01105 CDS
T06612
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sof
Serratia odorifera
Pathway
sof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11214_01105 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sof03019
]
NCTC11214_01105 (pnp)
03016 Transfer RNA biogenesis [BR:
sof03016
]
NCTC11214_01105 (pnp)
Enzymes [BR:
sof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NCTC11214_01105 (pnp)
Messenger RNA biogenesis [BR:
sof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC11214_01105 (pnp)
Transfer RNA biogenesis [BR:
sof03016
]
Prokaryotic type
tRNA degradation factors
NCTC11214_01105 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
aRib
S1_2
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
UPF0181
Spt6_S1
KH_SLS1_2
DUF4172
Motif
Other DBs
NCBI-ProteinID:
VDZ53545
UniProt:
A0A447KMN5
LinkDB
All DBs
Position
1:complement(1000123..1001913)
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AA seq
596 aa
AA seq
DB search
MQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFSGPIGAARVGYINDQYVLNPTTDEL
KESRLDLVVAGTEGAVLMVESEADVLSEDQMLGAVVFGHEQQQVVIENINSLVAEVGKPK
WDWQAPAVNETLHARVAELAEGRLGDAYHITEKQQRYAQVDAIKEDVIAALLAQDESLDA
GEIQDILGSVEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA
LVTATLGTARDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG
VLAMMPKPEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK
EQDNFVVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGAR
LHILGVMEQAISTPRGDISQFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE
DDGTVKIAATDGEKAKFAIRRIEEITAEIEVGRVYQGKVTRIVDFGAFVAIGGGKEGLVH
ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATAPEADAPAAPEAE
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggtgattgcgaccgtagtatcggtcaacccgcaggttaacccggacatcgtggcg
atgatcggtgcttctgccgccctgagcctgtccggtattccgttcagcggcccaatcggt
gcagcacgcgtcggttacatcaacgaccagtacgtgctgaacccgaccaccgacgagctg
aaagaaagccgtctggatctggtggttgccggtaccgaaggcgcggtactgatggttgaa
tccgaagctgacgttctgagcgaagatcaaatgctgggcgcggtggtattcggccacgag
cagcagcaggttgtgattgaaaacatcaattccctggttgccgaagtcggcaaaccgaag
tgggattggcaggcgccagcggttaacgaaacgctgcacgcccgcgtagcggaactggcg
gaaggccgtctgggtgacgcttatcacatcaccgaaaaacagcagcgttatgctcaggtt
gatgcgattaaagaagacgtgattgccgcattgctggcgcaggacgagtccctggacgct
ggcgaaatccaggacatcctgggcagcgtcgagaaaaacgtagtgcgtagccgcgtactg
cgtggcgaaccgcgtatcgacggtcgcgaaaaagacatgatccgtggtctggacgtgcgc
accggcgtactgccgcgcacccacggttccgcgctgttcacccgtggcgaaactcaggcg
ctggttaccgcgacgctgggtaccgcacgtgacgcgcagaacctggacgagctgatgggc
gaaaaaaccgacagcttcctgttccactacaacttccctccatactccgtgggtgaaacc
ggtatggtgggctcgcctaaacgtcgtgaaatcggtcacggtcgcctggcgaaacgcggc
gtattggctatgatgcctaaaccagaagatttcccgtacacggtgcgtgtggtgtctgaa
atcaccgaatccaacggttcttcttccatggcttcggtctgtggtgcctctttggcgctg
atggacgccggtgtgccgatcaaggctgccgttgctggtatcgccatgggtctggtgaaa
gagcaggacaactttgtggttctgtccgacattctgggtgacgaagatcacctgggtgac
atggactttaaagtggctggtagccgtgatggtatcaccgcgctgcaaatggacattaaa
attgaaggtatcacccgcgaaatcatgcaggtggcactgaaccaggccaagggcgcgcgt
ctgcacatcctgggcgtgatggaacaggctatcagcactccgcgtggcgatatttctcag
tttgcaccacgcatccacaccatcaagatcaatccggacaagatcaaggatgtgatcggt
aaaggcggttcagtcatccgtgcgttgactgaagagactggcactaccatcgaaatcgaa
gatgatggtacagttaaaatcgctgctaccgacggtgagaaggccaagtttgccattcgc
cgcatcgaagagatcaccgcagagatcgaagtgggccgcgtgtatcagggtaaagtgacc
cgtatcgttgatttcggcgccttcgtggcgatcggcggcggtaaagaaggtctggttcac
atttcacaaatcgctgacaagcgcgttgagaaagtgaccgactatctgcagatgggtcag
gaagtgccggtcaaggtgctggaagttgatcgccagggccgtgtgcgcctgagcatcaag
gaagctaccgcgcctgaagcggatgctcctgctgcaccagaagcagaataa
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