Serratia odorifera: NCTC11214_01906
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Entry
NCTC11214_01906 CDS
T06612
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sof
Serratia odorifera
Pathway
sof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11214_01906 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sof03021
]
NCTC11214_01906 (rho)
03019 Messenger RNA biogenesis [BR:
sof03019
]
NCTC11214_01906 (rho)
Transcription machinery [BR:
sof03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NCTC11214_01906 (rho)
Messenger RNA biogenesis [BR:
sof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC11214_01906 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
AAA
S1CSD-TOTE-2
DnaB_C
Motif
Other DBs
NCBI-ProteinID:
VDZ55917
LinkDB
All DBs
Position
1:1745463..1746722
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARLRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQNIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaacacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccttgcccgcctgcgtaagcaggacatcatcttctccattctcaag
cagcatgcgaaaagtggagaagatattttcggcgacggtgtgctggagatattgcaggat
ggatttggtttcctccgctccgcagacagctcctacctcgccggtcccgacgatatctac
gtttctcctagccaaattcgccgtttcaaccttcgtacaggtgataccatcgccgggaag
atccgtccgccaaaagaaggcgagcgttattttgccctgttgaaagtcaacgaagtcaac
tacgacaagccggaaaacgcccgtagcaaaattctgtttgaaaacctgacgccgctgcac
gccaactcgcgcctgcggatggaacgcggcaacggctcgaccgaagacctgaccgcacgc
gtactggatctggcatcaccgattggccgtggccagcgtgggctgatcgtcgcgccgcca
aaagccggtaaaaccatgctgctgcagaatatcgcgcagaacatcgcctacaaccaccca
gactgtgtgttgatggtgctgttgatcgacgagcgtccggaagaagtgaccgaaatgcag
cgtctggtgaagggcgaagtggtcgcgtcaaccttcgacgaaccggcttcccgtcacgta
caggttgcggaaatggttatcgaaaaggccaagcgcctggttgagcacaaaaaagacgtg
atcattctgctcgactcgatcacccgtctggcgcgcgcctacaacaccgtggtaccggcc
tccggcaaggtactgaccggtggtgttgatgccaacgccctgcaccgtccaaaacgcttc
ttcggcgccgcgcgtaacgtggaagagggcggtagcctgaccattatcgccaccgcactg
gttgataccggttcgaagatggacgaggtcatctacgaagaattcaaaggtaccggcaac
atggaactgcacctggcgcgtaaaatcgccgagaagcgtgtattcccggcgattgattac
aaccgttccggtacccgtaaagaagaactgcttaccacttctgaagaactgcagaaaatg
tggatcctgcgtaagattattcaccctatgggcgaaatcgatgcgatggaattcctcatc
aacaaattggcaatgaccaaaaccaatgacgagttcttcgatatgatgaagcgctcatag
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