Serratia odorifera: NCTC11214_01950
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Entry
NCTC11214_01950 CDS
T06612
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sof
Serratia odorifera
Pathway
sof03420
Nucleotide excision repair
sof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11214_01950 (uvrD)
03430 Mismatch repair
NCTC11214_01950 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sof03400
]
NCTC11214_01950 (uvrD)
Enzymes [BR:
sof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11214_01950 (uvrD)
DNA repair and recombination proteins [BR:
sof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11214_01950 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
NCTC11214_01950 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
DUF4391
Motif
Other DBs
NCBI-ProteinID:
VDZ56026
LinkDB
All DBs
Position
1:1778066..1780201
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AA seq
711 aa
AA seq
DB search
MNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAE
MRHRIEQLIGTSQGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRIVRA
LNIDEKQWPPRQAMWYINGKKDDGLRPQHIESYGNPVEATWLRIYQAYQEACDRAGLVDF
AELLLRAHELWLNKPHILNHYRERFTNILVDEFQDTNRIQYAWIRLLAGDRANVMIVGDD
DQSIYGWRGAQVENIQRFLKDFPGAETVRLEQNYRSTSNILKAANTLIANNDGRMGKNLW
TDGAEGEPISLYCAFNELDEARFVVNRIKSWQDNGGALNDCAILYRSNAQSRVLEEALLQ
TAMPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQT
ARDRQMTLWQATRALLQDKVLAGRAASALQRFSELVDALAHETADMPLHVQTDRVIRDSG
LFIMYEQEKGEKGQARIENLEELVTATRQFSYQDEDQDLMPLQAFLSHAALETGEGQADA
YQDAVQLMTLHSAKGLEFKQVFIVGVEEGMFPSQMSLDEGGRLEEERRLAYVGLTRAMEK
LTLTYAETRRLYGKEVYHRPSRFIGEIPEECIEEVRLRASVSRPVSHRRIGTPIAENDTG
YKLGQRVRHPKFGEGTIVNLEGSGEHSRLQIAFQGEGIKWLVAAYAKLETD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaatgataaacaacgcgaagccgtggcggcgccacgcagcaacctgttggtgctggca
ggcgcgggcagcggaaaaacccgggtgctggtacatcgcattgcctggctgctatcggta
gagaactgctcgccgtattcgatcatggccgtgaccttcaccaataaggcggcggcggaa
atgcgccaccgtatcgagcagctgattggcaccagccagggcggtatgtggattggcacc
ttccacggcctggcgcaccgcttgctgcgcgcccaccacatggacgccaatctgccgcag
gatttccagatactcgacagcgaagaccagctacgcctgctcaaacgcatcgtgcgcgcg
ctgaatatcgacgaaaaacagtggccgccgcgtcaggcgatgtggtacatcaacggcaag
aaagacgacggcctgcggccacagcacattgaaagctacggcaatccggtggaagcgacc
tggctgcgcatctatcaggcctatcaggaagcctgcgatcgcgccgggctggtggatttt
gccgaactgctgctgcgcgcccatgaactgtggctgaacaagccgcacattctcaaccat
taccgcgagcgcttcaccaatattctggtggacgaattccaggataccaaccgcatccag
tacgcctggatccgcctgctggcgggcgatcgcgccaatgtgatgatcgttggcgacgac
gatcagtcaatctatggctggcgcggtgcgcaggtagagaacatccagcgcttcctgaag
gatttccccggtgccgaaaccgtccgtctggagcagaattaccgttccaccagcaatatc
ctcaaggctgccaacacgctgatcgccaacaacgacggacgcatggggaaaaacctgtgg
accgacggcgccgagggcgagccgatttccctctactgcgcgttcaacgagctggacgaa
gcgcgctttgtggtcaaccgtatcaagagctggcaggacaacggcggggcgctgaacgac
tgcgcaattctctaccgcagcaacgcccaatcgcgcgtgctggaagaagcgctgttgcag
accgccatgccgtaccgcatttacggcggcatgcgcttcttcgaacgccaggaaatcaag
gatgcgctggcctatctgcggctgattgccaatcgcaatgacgacgcggcgtttgaacgg
gtggtgaacaccccgacgcgcggcatcggcgaccgcacgctggacgtggtgcgccaaacg
gcgcgcgatcggcagatgacgctgtggcaggccacccgggcgctattgcaggacaaggtg
ctggctggccgtgccgcgtctgccctgcagcgttttagcgaactggtggacgcgctggcg
catgaaactgccgatatgccgctgcacgtgcagaccgatcgggtgatccgcgattcgggc
ctgtttatcatgtacgagcaggaaaagggcgaaaaaggccaggcgcgcattgaaaacctt
gaggaactggtgacggcgacgcgccagttcagctaccaggacgaagaccaggatctgatg
ccgttgcaggcgtttctgtcgcatgcggcgctggaaaccggcgaagggcaggccgatgcg
tatcaggacgcggtgcaattgatgacgctgcactcggccaaagggctggagttcaaacag
gtatttatcgttggcgtcgaagaaggcatgttcccgagtcagatgtcgctggacgaaggt
ggacggctggaggaagagcgtcgcctggcctatgttggcctgacgcgggcgatggaaaag
ctgacgctgacctacgccgaaacccgccgtctgtacggcaaagaggtgtatcaccgcccg
tcgcgttttatcggcgagatcccggaggagtgcatcgaagaagttcgcctgcgcgccagc
gtatcgcgcccggtcagccatcgacggatcggcacgccgatcgctgaaaacgacaccggc
tacaaactgggtcagcgcgtgcgtcatcccaaatttggcgaaggcaccatcgtcaacctg
gaaggcagcggcgaacacagccgcttgcagatcgccttccagggcgaaggcatcaaatgg
ctggtggcggcctacgccaagctggaaaccgactga
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