Serratia odorifera: NCTC11214_01959
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Entry
NCTC11214_01959 CDS
T06612
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sof
Serratia odorifera
Pathway
sof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11214_01959 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sof03019
]
NCTC11214_01959 (recQ)
03400 DNA repair and recombination proteins [BR:
sof03400
]
NCTC11214_01959 (recQ)
Enzymes [BR:
sof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11214_01959 (recQ)
Messenger RNA biogenesis [BR:
sof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11214_01959 (recQ)
DNA repair and recombination proteins [BR:
sof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC11214_01959 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Peptidase_S66
Motif
Other DBs
NCBI-ProteinID:
VDZ56052
UniProt:
A0A3S4DXP1
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All DBs
Position
1:1785860..1787704
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AA seq
614 aa
AA seq
DB search
MGKCVSTAAVINRELLAEQVLRDTFGYQQFRPGQQTIINAAINGQDCLVVMPTGGGKSLC
YQIPALVMDGLTLVVSPLISLMKDQVDQLLAYGVSAACYNSTQTREQQLEVMAGCRRGDV
KLLYIAPERLMMDSFLDLLDHCQPALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPTMP
VIALTATADEATRGDITRLLALHDPLVQVSSFDRPNIRYTLVEKFKPLDQLWRFVQDQRG
KSGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAF
GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEEKP
AGQQLDIERHKLNAMSAFAEAQTCRRLVLLNYFGEGKQQACGNCDICLDPPKRYDGLEDA
RKALSAIGRVGQRFGIGYVVEVLRGSNNQRIREFGHDKLPVYGIGRDHTTEHWTSVLRQL
IHLGFITQNIALHSALQLTEAARPVLRGEVPLQLAVPRIQSLKPRSGGSQKTYGGNYDRK
LFAKLRKLRKSIADEENIPPYVVFNDTTLLEMAEQMPTKASELLSVNGVGQRKLERFGSP
FMAMIRDHLDNDDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggggaagtgtgtgtctaccgcagcagtgataaacagagagttgctggcagaacaggtg
ttacgtgacaccttcggctatcagcaattccgtccgggacaacaaacgattatcaatgcg
gctatcaacgggcaggactgcctggtggtgatgccgaccggcggcggtaaatcgttatgc
taccaaatcccggcgctggtgatggacgggctgacgctggtggtttccccgttgatttcg
ttgatgaaggatcaggtcgaccaattgctggcctatggggtgtctgcggcctgctacaac
tctacccagacgcgcgagcagcagcttgaggtgatggccggttgccgccgcggcgatgtg
aagctgctgtatatcgcccccgaacggctgatgatggacagcttcctcgacctgctcgac
cattgccaaccggcactgctggcggtggacgaagcgcactgcatttcgcagtgggggcac
gatttccgcccggaataccgggcgcttggccagttgaagcagcgcttccccacgatgccg
gtgattgccctgaccgccaccgccgacgaggcgacacgcggcgacattacccgcctgctg
gcgctgcacgatccgttggtgcaggtcagcagcttcgaccgaccgaacatccgctacacg
ctggtggagaagttcaagccgctcgaccagctttggcgctttgtgcaggatcagcgcggc
aaaagcggcatcatttattgcaacagccgcgccaaggtggaagacaccaccgcgcgcctg
caaagccgcggtctgagcgttgcggcataccatgccgggctggacaacgagcgccgtgcc
caggtgcaggaggcgttccagcgtgatgatttgcaggtggtggtagccaccgtcgccttt
ggcatggggatcaacaagcccaacgtgcgctttgtggtgcattttgacattcctcgcaac
atcgaatcctattatcaggaaaccggccgcgccgggcgcgacggcttaccggcggaagcc
attctgttatacgacccggccgatatggcctggttgcgtcgctgtctggaggaaaaaccg
gccggccagcaactggacattgaacggcataagctgaacgcaatgagcgcgtttgccgag
gcgcaaacctgtcgtcgtctggtgttgttgaactactttggcgaaggcaagcagcaggcc
tgcggtaactgcgatatttgtctcgatccaccaaaacgctacgacggactggaggatgcg
cgcaaggcgctatcagcgattggccgcgttggacagcggttcggcatcggctacgtggtc
gaagtactgcgtggttccaacaaccagcgcattcgcgagttcggccacgacaaattgccg
gtgtacggcattggccgcgatcacactaccgaacactggaccagcgtactgcgccaactg
attcatctgggcttcattacgcaaaatattgccctgcactcggcgctacagctcaccgaa
gccgcgcgcccggtgctgcgcggtgaagtgccgttgcaactggcagtgccacgaattcag
agcctgaagccgcgcagcggcggcagtcagaaaacctacggcggcaactacgatcgcaaa
ctgtttgccaaattgcgcaagctgcgcaaatctattgccgacgaagaaaacattccgccc
tacgtggtgttcaacgataccacgctgctggaaatggccgagcagatgccgaccaaggcc
agtgaactgctcagcgtcaacggggtagggcaacgcaaactggagcgctttggttcgccg
tttatggcgatgatccgcgaccatctcgataatgacgacgactag
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