Serratia odorifera: NCTC11214_02085
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Entry
NCTC11214_02085 CDS
T06612
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sof
Serratia odorifera
Pathway
sof03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC11214_02085 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sof03021
]
NCTC11214_02085 (rpoC)
03400 DNA repair and recombination proteins [BR:
sof03400
]
NCTC11214_02085 (rpoC)
Enzymes [BR:
sof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC11214_02085 (rpoC)
Transcription machinery [BR:
sof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC11214_02085 (rpoC)
DNA repair and recombination proteins [BR:
sof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC11214_02085 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
VDZ56403
LinkDB
All DBs
Position
1:1904592..1908818
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECELLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLSGPKEAERIYRAG
LASLHARVKVRITEEIKNTEGESVHQTSIIDTTIGRAILWMIVPKGLPYSIVNQPLGKKA
ISKMLNTCYRIMGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHNGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKFVMNAAGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMGKGDGAEVNGGETVANW
DPHTMPVISEVSGFIRFADMVDGQTITRQTDELTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMAAQYFLPGKAIVQLEDGIQIGAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDAYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVNAGGTEFLEGEQAEVSRVKIANRQLAAEGKIEATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRALGETPV
APQVSAEEASANLAELLNAGNLGGNDDQ
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aagattgctctggcatcgccagacatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggcaagtacaagcgcttgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgaactggcttccccgactgcgcacatctggttcctgaaatcactg
ccatcgcgcattggtttgctgctggatatgccactgcgtgacatcgaacgcgtactgtac
ttcgaatcctatgtggtgattgaaggcggtatgaccaacctcgagcgccgtcagatcctg
actgaagagcagtatctggacgcgctggaagagtttggtgacgagttcgacgctaaaatg
ggtgccgaagccatccaggccctgttgaaaaacatggatctggaagccgaatgcgaactg
ctgcgtgaagagctgaacgaaaccaactccgaaaccaaacgcaagaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtccactggttccgttggatggtggccgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtttgaaa
cgcctgctggatctggctgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaagcgcgtcgactactccggtcgttcggttatcaccgtcggtccatac
ctgcgtctgcaccagtgtggcctgccgaagaaaatggcgttggagctgttcaaaccgttc
atctacggcaagttggaactgcgtggcctggccaccaccatcaaagccgccaagaaaatg
gttgagcgcgaagaagccgtcgtttgggatatcctggacgaagtcatccgcgaacacccg
gtactgctgaaccgtgcaccaacgctgcaccgtttgggtatccaggcattcgagccggta
ctgatcgaaggcaaggccatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggccgttcacgtaccgctgacgctggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacatcctgtctccagcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgactcgcgactgtgttaacgcc
aagggcgaaggcatggtgctgagcggcccgaaagaagccgagcgtatttaccgcgctggc
ctggcctctctgcatgcgcgcgtcaaagtgcgtatcaccgaagagatcaagaacaccgaa
ggcgagtctgtacaccagacttcgatcatcgacaccaccattggtcgagccatcctgtgg
atgatcgtaccaaaaggtctgccgtattcgatcgttaaccagcctttgggtaagaaagcg
atctccaagatgctgaacacctgttaccgcatcatgggtctgaagccgaccgttatcttt
gctgaccagatcatgtacaccggttttgcctacgctgcccgttccggcgcatccgttggt
atcgatgacatggttatcccggcgaaaaaagccgagatcatcgaagaagcggaaaccgaa
gttgccgaaatccaggagcagttccagtctggtctggtaaccgcgggcgaacgctacaac
aaggtgatcgatatctgggctgcggctaacgaacgcgttgccaaggcgatgatggaaaac
ctgtcggtagaagacgtggttaaccgtgacggtgaagtggaacagcaggtttccttcaac
agcatctttatgatggccgactccggtgcacgtggttccgccgctcagattcgtcagttg
gccggtatgcgtggcctgatggcgaaaccggacggctcgatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggcttggcggataccgcactgaaaacggcaaactccggttatctgacccgtcgtctg
gtagacgtcgcgcaggatctggttgtcaccgaagacgactgtggcactcacaacggcatc
ctgatgactccggttatcgaaggtggcgatgtgaaagagccgctgcgtgaacgcgttctg
ggtcgtgtaacggcagaagatgtgctcaagccgggtacggcagacatcctggtgccgcgt
aacaccctgctgaacgagaagacctgtgacctgttggaagagaactctgtcgacagcgtt
aaagtccgttccgtggtgagctgtgaaaccgacttcggcgtgtgcgccaactgctatggt
cgtgacctggcacgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgccgaatccagcattcaggtgaaaaacaagggtagcatcaagctg
agcaatgccaagttcgtgatgaacgcggccggcaagctggtgatcacctcgcgtaacacc
gagctgaagctgatcgacgaattcggtcgtaccaaggaaagctacaaggtgccttacggt
gccgtgatgggcaaaggtgacggtgcagaagttaacggcggcgaaaccgttgctaactgg
gatccgcacaccatgccggtaatcagtgaagtgagcggtttcattcgcttcgccgatatg
gttgacggccagaccattactcgccagaccgacgaactgaccggtttgtcttccctggtg
gtactggatagtgcagagcgtaccggtagcggtaaagacctgcgtccggcgctgaagatt
gttgacgccaaaggcgacgacgtactgatcccaggcaccgatatggctgcccagtacttc
ctgccaggcaaggcaattgtacagctggaagacggcattcagatcggtgcgggtgatacc
ctggcgcgtattccacaggaatccggcggtaccaaggatattaccggtggtctgccacgc
gttgcggatctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctcgttcggtaaagagaccaaaggcaaacgtcgcctggtgatcacgccgctg
gatggcagcgatgcctacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggcgaacgtgtggaacgcggcgacgtggtatccgatggtccagagtcaccgcacgacatt
ctgcgtctgcgtggtgtgcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgtcaacgctggtggcaccgagttcctggaaggcgaacaggct
gaagtgtctcgcgtcaagattgccaaccgtcagcttgctgccgaaggcaaaatcgaagcg
acctttacacgtgacctgctgggtatcaccaaggcttccttggcgaccgagtcgttcatc
tctgccgcatcgttccaggaaacgacgcgcgttctcaccgaagcggccgtggccggtaaa
cgtgatgaactgcgtggcctgaaagaaaacgtcatcgttggccgcctgatcccggcgggt
accggttacgcttatcatcaggaccgtatgcgtcgtcgtgctctgggtgaaaccccggtt
gcaccacaggtgagcgcggaagaagcgtcggccaacctggctgaactgctgaatgccggc
aacctgggcggtaacgacgaccaataa
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integrated database retrieval system
