Serratia odorifera: NCTC11214_02263
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Entry
NCTC11214_02263 CDS
T06612
Symbol
csrD
Name
(GenBank) Regulator of CsrB and CsrC decay CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sof03019
]
NCTC11214_02263 (csrD)
Messenger RNA biogenesis [BR:
sof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC11214_02263 (csrD)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
Hrs_helical
RH1
DUF1330
Motif
Other DBs
NCBI-ProteinID:
VDZ56909
UniProt:
A0A447KQS9
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All DBs
Position
1:2061788..2063719
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AA seq
643 aa
AA seq
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MRFTTKLSALITLLVALAMFLMLMGCSYSFFYVTQERMDRRFDALVTSIDQALLLDSPQD
QEKWLPLLTRPLGIVAISVDTARHNVLRYQSPTVKQPWDALAGYRQVALPLLHHPESTLH
ITYQDPFAGDVRSLQSTMAVTLAIVVMVIVLLLSLRWLREQAEGEDLLERRARRILNGER
EEVMKGEVREWPASVSGALDRLLADLAEAREERSRVDSLIRAFAAQDAKTGLNNRLFFDN
QLTTQLEEDGSHGIVMMVRFPDFDTLRETYGNAAVQELMYSLVNLLSTFVMRYPAALLAR
YFHSDFTVLLPHRSLKEADGIASQLVNAIDSLPSKALIEREAFLHIGIVAYRSGQTTEQI
IDYAEQATRHAALQGENGWHVYDSLVPEKGRGSVKWRTLLEQVLARGGPRLYQKPAIDVD
GEVHHREIMSRIYDGTQELLPAEYMPLVQQFGLAESYDRQLMGRIIPLLRLWPEETLAFP
LCVDSLLQRPFQRWLRDTLLQCEKTHRRRILIELAEADVCQHIDRLRPVLRLLAGLGCRL
AVSQAGLTVVSTSYIKSLQVEIVKLHPGLVRSIDRRDENQLFVQSLSSACEGTSARLFAA
SVRTRNEWQTLKERGIHGGQGDFFASPEPIDVGRKKYSRRYRV
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttaccaccaaactctctgcattgattaccctgctcgtcgcactggctatgttt
ttaatgctgatgggctgttcctacagcttcttctatgtcactcaggagcgcatggatcgc
cgttttgacgcgctggtcacctcgatcgatcaggcgctgctgctggactcgccgcaggat
caggaaaagtggttgccgctgctgacgcggccattgggcatcgttgcgatcagcgtggat
acagcacgccataacgtattacgttatcagtcgcctacggtaaaacagccgtgggacgct
ctggcaggctaccgtcaggttgctttgccgctgctgcatcaccccgaaagtacgctgcac
attacctatcaggatccctttgccggggacgtgcgatcgctgcagtccaccatggcggtg
acgctggcgattgtcgtcatggtgatcgtgctgctgctcagcctgcgctggctacgtgaa
caggcggaaggcgaggatctgctcgaacgccgtgcgcggcgcattctcaacggcgagcgc
gaagaggtgatgaaaggtgaggtgcgcgaatggcccgccagcgtcagcggggcgctcgat
cggttgttggcagacttggccgaagcgcgtgaagagcgcagccgggttgattctctcatc
cgggcatttgccgcgcaggatgcgaaaaccggccttaacaaccgactgttttttgataac
caactgacgacccaactggaagaggacggctcgcacggcattgtgatgatggtgcgtttc
ccggacttcgacaccctgcgtgaaacctacggcaacgccgctgtgcaggagctgatgtat
tcgctggtcaatctgttgtccaccttcgtcatgcgctatccagccgcgctgttggcgcgc
tatttccacagcgattttaccgtgttgctaccgcatcgtagcttgaaggaggcggatggc
atcgcctcacaattggtcaacgccatcgattcgttaccctcgaaggcgcttatcgagcgc
gaagcgtttctgcatattggcatcgtggcctatcgcagcggacaaaccaccgaacagatt
atcgattatgccgagcaggcgacgcgccacgccgcattgcagggcgaaaacggctggcac
gtctatgacagcctggtgccggaaaaaggccgcggcagcgtgaagtggcgtaccctgctg
gagcaggtgctggcgcgtggcggcccgcgcctgtatcagaagccggcgattgacgtcgac
ggtgaggtgcatcaccgggaaatcatgagccgaatttacgacggtacgcaggaattgctg
ccggcagaatacatgccgctggtgcagcagttcgggttggcggaaagttacgatcgccag
ttgatggggcgcattattccgttgttgcggttatggcccgaagagacgctggcatttccg
ctgtgcgttgactcattattacagcggccgttccagcgttggttgcgcgatacgttgtta
caatgcgaaaaaacgcatcggcggcggattctgattgaacttgcagaggcagatgtgtgt
caacatatcgaccgcttacgcccggtgttgcgtttgcttgcaggactgggctgtcgtctg
gcggtttcccaagcgggtttaaccgtggtcagcacttcctatatcaagtcattgcaggtg
gaaatcgtcaagctccacccgggtttggtgcggagtattgataggcgcgatgaaaatcaa
ctgttcgttcagagtctgtccagtgcctgcgaagggaccagcgcacggctgtttgccgcc
agtgtgcgtacgcgcaatgagtggcagaccttgaaggaacgtggtattcacggtggtcag
ggtgactttttcgcatcgccggaaccgatcgatgtcgggcgcaaaaaatattcgcgccgt
tatcgtgtttaa
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