Serratia odorifera: NCTC11214_02303
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Entry
NCTC11214_02303 CDS
T06612
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sof
Serratia odorifera
Pathway
sof02020
Two-component system
sof02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCTC11214_02303
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC11214_02303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sof03021
]
NCTC11214_02303
Transcription machinery [BR:
sof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC11214_02303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Motif
Other DBs
NCBI-ProteinID:
VDZ57060
UniProt:
A0A3S4DJQ9
LinkDB
All DBs
Position
1:complement(2098938..2099999)
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AA seq
353 aa
AA seq
DB search
MWQVDLTPFSDTDAAIATSIVDAVDDTGYLTVPLEDILESIGDENVSMDEVEAVLKRVQR
FDPIGVAARDLRDCLLIQLSQYAKDTPYLNEARQIISDHLDLLANHDFRSLMRSTRLKED
TLKEAMLLIQSLDPRPGQSINTGESEYVIPDVLVRKVQGKWAVELNADSIPRLKINQQYA
ALGNSSRSEADGQFIRSNLQEAKWLIKSLESRNDTLLKVTRCIVEQQEAFFEQGEEFMKP
MVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAIRALV
KKLIAAENPAKPLSDSKLATLLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaggtggatctgacgccgttttcagataccgatgccgccattgccacctcgatc
gtcgatgccgtggacgatactggctaccttaccgttccgctggaagacattctggaaagc
attggcgacgagaatgtctcgatggacgaagtggaagccgtactgaaacgcgttcagcgt
ttcgatcctatcggcgtggcggctcgtgacctgcgcgactgcctgctgattcagctttcc
cagtatgccaaagacaccccatacctcaacgaagcacggcagatcatcagcgatcacctg
gatttgctggccaatcacgactttcgcagcctgatgcgatcaacccggctaaaagaagat
acactgaaagaagcgatgctgctgattcagtcactcgacccacgcccggggcagtcgatc
aacaccggtgaatcggagtacgtcattcccgatgtgctggtgcgcaaggtgcagggcaag
tgggcggtggaacttaacgccgacagcattccgcgtctgaagatcaaccagcaatatgcc
gcactgggcaacagttcgcgtagcgaagccgatggccagtttatccgcagtaacctgcag
gaagccaagtggctgatcaaaagcctggaaagccgtaacgatacgctactgaaagtcaca
cgctgcatcgtcgagcagcaggaagcgttctttgaacaaggtgaggaatttatgaaaccc
atggtgctggcggatatcgcacaggccgtggatatgcatgaatcgacgatctcacgcgtg
accacgcagaagttcctgcacagcccgcgcggtattttcgaattgaagtatttcttctca
agccacgtgaacaccgacagcggcggcgaagcctcctcgacggccattcgtgcactggtg
aagaaattgatcgcggcggaaaaccccgccaaaccgctgagcgacagcaaactggccacc
ctgctttccgatcaggggatcatggtggcgcggcgcaccgtcgccaagtaccgagagtct
ttgtccatcccgccgtcgaaccagcgtaaacagttggtttga
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