Serratia odorifera: NCTC11214_02381
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Entry
NCTC11214_02381 CDS
T06612
Symbol
rpoD_1
Name
(GenBank) Sigma-70
KO
K03086
RNA polymerase primary sigma factor
Organism
sof
Serratia odorifera
Pathway
sof02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC11214_02381 (rpoD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sof03021
]
NCTC11214_02381 (rpoD_1)
Transcription machinery [BR:
sof03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC11214_02381 (rpoD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
DNA_ligase_A_N
HTH_SUN2
FlgN
TMPIT
BLOC1_2
Motif
Other DBs
NCBI-ProteinID:
VDZ57283
UniProt:
A0A3S4FN58
LinkDB
All DBs
Position
1:complement(2175560..2176732)
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AA seq
390 aa
AA seq
DB search
MREQYEATRQVIKTNGRSHASAAEEILKLSDVFKQFRLVPKQFDFLVNSMRTMMDRVRTQ
ERIIMKLCVEQCKMPKKNFVTLFAGNETSDSWFEAALAMAKPWSEKLKDVAEDVQRSLQK
LRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD
LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL
NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFI
EDTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVT
RERIRQIEAKALRKLRHPSRSEVLRSFLDD
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcgagcagtatgaagcgacccgtcaggtcatcaagaccaacggccgcagccacgcc
agcgcagccgaagaaattctgaagctgtctgacgtattcaagcagttccgcctggtgccg
aagcagttcgacttcctggtcaacagcatgcgtaccatgatggatcgcgtccgtacccag
gaacgcatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaagaaaaacttcgtc
acgctgttcgccggcaatgaaaccagtgactcctggttcgaagcagcattggcgatggcc
aagccctggtccgaaaaactgaaagacgtggcggaagacgtgcagcgcagcctgcaaaaa
ctgcgtcagattgaagaagagaccggcctgaccatcgagcaggtaaaagacatcaaccgt
cgcatgtcgatcggcgaagcgaaggcccgtcgcgcgaagaaagaaatggttgaagcgaac
ttgcgtctggttatttccatcgccaagaaatacaccaaccgcggtctgcaattcctggat
ctgattcaggaaggcaacatcggtctgatgaaagccgtcgacaagttcgaataccgccgc
ggctataagttctcgacctatgccacctggtggatccgtcaggccatcacccgctctatc
gccgatcaggcgcgcaccatccgtattccggtgcatatgattgagaccatcaacaagctc
aatcgtatttcgcgtcagatgctgcaagagatgggccgtgagccaacgccggaagagctg
gcagaacgcatgttgatgccggaagacaaaatccgcaaggtgctgaagatcgccaaagag
ccgatctccatggaaacgccgattggtgatgatgaagattcacatctgggcgatttcatc
gaggataccacccttgagctgccgctggattccgccacatcggaaagcctgcgctccgcc
acgcacgacgtgctggctggcctgaccgcccgtgaagcgaaagtgctgcgtatgcgtttc
ggtatcgatatgaacactgaccacacgctggaagaagtgggcaaacagtttgacgttacc
cgtgagcgtattcgccagatcgaagcgaaggcgttgcgcaaactgcgccacccaagccgt
tctgaagtactgcgcagcttcctggacgattaa
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