Serratia odorifera: NCTC11214_02644
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Entry
NCTC11214_02644 CDS
T06612
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sof03019
]
NCTC11214_02644
Enzymes [BR:
sof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC11214_02644
Messenger RNA biogenesis [BR:
sof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NCTC11214_02644
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
WHD_HA2
DUF6368
AAA_22
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
VDZ58029
UniProt:
A0A447KSB5
LinkDB
All DBs
Position
1:2431010..2433448
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AA seq
812 aa
AA seq
DB search
MSSLPVSAILDELLTALHSAPQVLLHAPTGAGKSTWLPLQILARAGLPGRIIMLEPRRLA
AKNVAYRLAQQLGEEPGATVGYSMRAETRSGPDTRLMVVTEGVLTRMLQQDAELQGVSLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLVMSATLDNARLSPLLPDAPVVVSAGRS
FPVERHYHSLASYPRLEDGVAAAVKRLLAEQHGSLLLFLPGVAEINRVQERLNGAVASDV
DLCPLYGALPLAQQQRAIQPAAAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARYDP
RSGLTRLLTQRISQASMIQRAGRAGRLEPGICWHLFAREQGERAAEHAEAEIGQSDLCGF
WLELLQWGCVDPGQLTWLDAPPASALAAAQRLLHSLGATDDGGKLTVAGRQMAMMGCEPR
LAAMLHAGAQSGADGLATAALLAALLEEPPRGGAMDIDYWLSRPQPHWQRRARQLAQRLP
GRAGQVDVTLAPRLLAQAFADRIAQRRGQDGRYLLANGMGAAMDQDEALSRTPWLIAPAL
LQGANSPDARILLALPVDIEALAAQLPHLIRQQTAVEWDEEKGTLRAWQRQQIGRLTLKA
RPLAKPADDALQQALIEWVRTQGLAVLGWDSAAEQLRIRLQCAQRWLPEADWPAVDDETL
LDSLERWLLPSLGGVRDLRGLKQVNLAEALGRLLDWQQKQRLDNALPTHYTVPTGSRLPI
RYDADKPPLLPVRLQEMFGEQRSPMLAEGRIAVVLELLSPAHRPLQITGDLAAFWQGAYR
EVQKEMKGRYPKHLWPDDPANAAPTRRTKKYQ
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttcattgcccgtcagcgcgatactcgatgaactgctcactgcattgcacagcgca
ccgcaggtgctgctgcacgcccctaccggtgccggaaaatcgacctggctgccgttgcag
atcctggcgcgagcgggattgccggggcgcattatcatgctcgagccccgccggctggcg
gcaaaaaacgtcgcttaccgcctggcgcagcaactgggggaagagccgggcgcaacggtg
ggctacagcatgcgggccgaaacgcgcagcgggcctgatacccgcctgatggtggtgact
gaaggggtgctgacccgcatgttgcagcaggatgccgaattgcagggcgtctcgctggtg
atcctcgatgaatttcatgagcgcagcctgcaggcggatttggcgctggcgctgctgctc
gacgtgcaacaggggctacgtgacgatctaaagctgctggtgatgtcggcgacgctggac
aatgcgcgcctgtcaccgctgttgccggacgcgccggtggtggtgtcggcagggcgcagc
ttcccggtagagcgtcactatcattctctggccagctacccgcggctggaagatggcgtg
gcggcggcggtcaagcgcctgctggctgagcagcacggctcgctgctgctgttcctgccg
ggggtggcggagatcaaccgggtacaggaacgccttaatggtgccgtcgccagcgatgtc
gatctttgcccactgtacggcgcgctgccgctcgcacagcaacagcgggcgatccagccg
gcggctgccgggcgacgcaaggtggtgctggcgaccaatattgccgaaaccagcctgacc
atcgaaggcatacggctggtggtcgacagcgggttggagcgcgtcgcgcgttacgacccg
cgcagcggtctgacacggttgctgacacagcgtatcagccaggcgtcgatgatccagcga
gccggccgcgccggacgcctggagccgggcatctgctggcatctgtttgccagggagcag
ggcgagcgcgccgccgagcatgccgaggcggaaataggacaaagcgatttgtgcggtttt
tggctggagctgctgcaatggggctgtgtggatcccgggcaactgacctggctcgatgcg
ccccccgcaagcgcactggcggcggcgcaacgcctgctgcattcccttggcgccaccgac
gacggcggcaagctgaccgtcgccgggcggcaaatggcgatgatgggctgtgaaccccga
ctggcggcgatgctgcatgccggcgcgcaatcaggcgccgatgggctggcgaccgcggcg
ctgctggcggcactgttggaggagccgccgcgcgggggagccatggatatcgattactgg
ctgagtcgcccgcagccgcattggcaacggcgcgcgcgccagcttgcccaacggctgccg
gggcgtgccggtcaggtggatgtcacgctggcgccgcgtttgctggcgcaggccttcgcc
gaccgcattgcccaacggcgtggccaggatggccgttacctgttggcaaacggcatgggt
gccgcaatggatcaggatgaggctctgtcgcgcacgccgtggctgattgcacccgcgttg
ttacagggagccaacagtcccgatgcacgcatcctgttggcgttgccggtagatatcgag
gcattggccgcacagttgccgcacctgatacggcagcagaccgccgtcgagtgggatgag
gagaagggcacgctgcgcgcctggcagcgccagcagattggccgcctgacgctgaaagcc
cgaccgttggcaaaaccggcggacgacgcgctgcaacaggcgctgatcgagtgggtacgc
acgcaggggctggcggtgctgggttgggatagcgcagccgagcaactgcgtattcgttta
caatgcgcacagcgctggctgccggaggccgactggccagcggtggatgatgagaccctg
ttggactcgctggagcgctggctgctgccatctctcggcggcgtgcgggatttacgcggg
ctcaagcaggtcaaccttgccgaggcccttggtcggctgctcgactggcaacaaaagcag
cggctggataatgcgttgcccactcattacactgtgccgaccggcagtcgcctgccgatc
cgttacgatgcggacaagccgccgctgttgccggtgcgtttgcaggaaatgtttggtgaa
cagcgcagtccgatgctggccgagggtcgcatcgcggtggtgcttgagttactctctccg
gcgcatcgaccgctgcaaattaccggcgatctggcggcgttttggcaaggggcctaccgc
gaagtgcaaaaagagatgaaagggcgctacccgaagcacttatggcctgacgacccggcc
aacgccgctccgacgcggcgtaccaagaaataccaatag
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