Serratia odorifera: NCTC11214_02983
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Entry
NCTC11214_02983 CDS
T06612
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sof03009
]
NCTC11214_02983 (srmB)
Enzymes [BR:
sof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11214_02983 (srmB)
Ribosome biogenesis [BR:
sof03009
]
Prokaryotic type
rRNA helicases
NCTC11214_02983 (srmB)
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GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
VDZ59148
UniProt:
A0A3S5D7J0
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All DBs
Position
1:complement(2732902..2734224)
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AA seq
440 aa
AA seq
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MTATNFSELDLDERLINALRDKGYDRPTAIQAAAIPPAMDGRDVLGSAPTGTGKTAAFLL
PVLQHLLDFPRKKSGPPRVLILTPTRELAMQVADQARELAAHTSLDIATITGGVAYMNHA
EVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETISAETRW
RNQTLLFSATLEGEAIREFAERILKEPVEVEADPSRRERKKILQWYYRADDVKHKTALLV
HLLQQPDVQKSVIFVRKRERVHELATWLREAGINTCYLEGEMVQAKRNEAVKRMMDGRVN
VLVATDVAARGLDILDITHVFNFDMPRTADTYLHRIGRTGRAGRKGTAISLVEAHDHLLL
GKVGRYLNEPLKARVIDELRPSTKQPSEKSNGKPSKKVLAKRAESKEKNKEKAKVKVRHR
DAKNVGKRRQAKAKPEDSGK
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaaccaatttttccgaactcgatctcgatgaacgcctgattaacgccctgcgc
gataaaggctacgaccgcccaaccgccattcaggccgcagccattccgccggccatggac
gggcgtgacgtattgggttcggcgccaaccggcaccggtaagaccgccgcattcctgctg
ccggtattacagcatctgctggatttcccacgtaaaaaatccggcccaccgcgcgtactg
atcctcaccccaacgcgtgaactggcaatgcaggtcgccgatcaggcgcgtgaactggct
gctcatacctcgttggacatcgccaccattaccggcggcgtggcgtatatgaaccacgcg
gaagtgttcagcgaaaatcaggacgtggtggtcgccaccaccggccgcctgctgcaatac
atcaaagaagaaaacttcgactgccgtgcggtagaaacgctgatcctcgacgaagccgac
cgcatgctggatatgggcttcgcgcaggatatcgaaaccatttcggccgaaacccgctgg
cgcaaccagacgctgctgttttccgccacgctggaaggcgaagccatccgcgaatttgcc
gagcgcattttgaaagagccggtggaagttgaagccgacccttctcgtcgcgaacgcaaa
aagattttgcaatggtactaccgtgccgacgacgttaagcataaaaccgcgctgctggtt
catctgctgcaacagccggatgtgcaaaagtcggtgatcttcgtgcgcaagcgcgaacgg
gtgcatgaactggcgacctggctgcgtgaggcgggcatcaacacctgctatctcgaaggg
gaaatggtgcaggccaagcgcaacgaagcggtaaaacgcatgatggacggccgggtcaac
gtgctggttgccaccgacgttgcggcacgtggtctggatattctcgatatcacccacgtg
ttcaactttgacatgccgcgtaccgccgatacctatctgcatcgcattgggcgtactgga
cgcgccggacgcaagggcaccgccatttcactggtggaagcgcacgatcatctgctgctg
ggcaaggtcggccgttatctcaatgaaccgctgaaagcgcgggtgattgatgagctgcga
ccaagcaccaagcagccaagcgaaaagagcaacggcaaaccgtccaagaaggtgctggcc
aagcgcgcagagagcaaagaaaagaacaaagaaaaagccaaagtgaaggtgcgtcaccgc
gacgccaaaaacgttggcaaacgtcgtcaggccaaagccaagcctgaagacagcggcaag
taa
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