Serratia odorifera: NCTC11214_03512
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Entry
NCTC11214_03512 CDS
T06612
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sof
Serratia odorifera
Pathway
sof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NCTC11214_03512 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sof03400
]
NCTC11214_03512 (sbcB)
Enzymes [BR:
sof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NCTC11214_03512 (sbcB)
DNA repair and recombination proteins [BR:
sof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NCTC11214_03512 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC11214_03512 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC11214_03512 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
YkoP
Motif
Other DBs
NCBI-ProteinID:
VDZ60732
UniProt:
A0A3S4HPP2
LinkDB
All DBs
Position
1:complement(3221237..3222664)
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AA seq
475 aa
AA seq
DB search
MSSKAPATFYFHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPDPE
AVMITGITPQEALAKGVCEAEFARQIHQAFSVPGTCIVGYNNIRFDDEVSRNIFYRSFYD
PYAYSWQNGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFRLEHLTRANGVAHEQAHD
AMSDVHATIAMAKLVRQAQPRLFDYLLQHRNKHKLNALVDIAEMTPLVHVSGMFGAARSN
TSWVAPLAWHPDNKNALIVCDLAGDMTPLLELDADQLRERLYTRRDRLSADRPPVPIKLV
HINKCPVLAPAKTLLPENADRLGIDRQACLNNLQILRQHPQVREKVVALYADAEPFAASD
DVDARLYDGFFSDADKAAMKIIQQTKPQNLPALDLTFNDDRMQELLFRFRARNYPNTLDD
GEQRRWLQHRQTALSAEKVQSYVLQLEALYNLHEADSAKLALLKSLFDYGKQLVG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgagcagcaaggcaccggccacattctacttccacgactatgaaaccttcggcaaaagt
ccatcgatggatcgcccggcgcagttcgccggcgtgcgaaccgacatggactttaatatt
atcgaagagccgctggtgatctactgcgccccggccgatgactacctgcccgaccccgaa
gcggtgatgattaccggtataaccccgcaggaggcgctggcaaaaggcgtgtgcgaagcg
gagttcgcccgccagatacaccaggccttcagcgtccccggcacctgcatcgtcggctac
aacaacattcgcttcgatgacgaagtcagccgcaacatcttctatcgcagtttttacgac
ccttatgcctacagctggcagaacggcaattcccgctgggacttgctcgatgtgatgcgt
gcctgctacgccctgcgccctgagggcatcgtctggccagaaaacgacgacggtttcccc
agtttccggcttgagcacctgacgcgcgccaacggcgtcgcgcatgaacaggcgcacgac
gcaatgtccgacgtgcatgccaccattgccatggccaagctggtacgtcaggcccagcca
cggctgtttgattacctgctgcaacaccgcaacaaacacaagctgaacgcgctggtcgac
attgccgaaatgacgccgctggtgcacgtctccggcatgtttggtgccgcacgcagcaac
accagttgggtcgcgccgctggcctggcacccggacaataaaaatgcgctgatcgtgtgc
gacctggccggcgacatgacgccgctgctggagctggatgccgaccaactgcgtgaacga
ctgtatacccgccgcgatcggctcagcgccgatcggccgccggtgccgatcaaactggtg
catatcaacaaatgcccggtgctggcgccggcaaaaacgctgctgccggagaatgccgac
cggctgggcatcgatcgccaggcctgtctgaacaatctgcagatcctgcgccagcatccg
caggtgcgtgaaaaggtggtggcactgtatgctgacgccgaaccttttgctgccagtgac
gacgtcgatgccaggctgtatgacggcttcttcagcgacgccgacaaagcggcgatgaaa
atcattcagcagaccaaaccgcaaaatctgccggcgctggatttgaccttcaacgatgac
cgtatgcaggagttgctgttccgtttccgcgcgcgcaattaccccaatacgctggatgac
ggcgagcaacgtcgctggctgcaacatcgccagacagcgctcagcgccgaaaaagtgcaa
agttatgtgctgcaactggaagcgttatacaacctgcatgaagcggacagcgccaagctg
gcgttgctgaaatcgctgttcgattacggcaagcaactggttggttga
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