Serratia odorifera: NCTC11214_03981
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Entry
NCTC11214_03981 CDS
T06612
Symbol
dbpA
Name
(GenBank) ATP-independent RNA helicase dbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sof03009
]
NCTC11214_03981 (dbpA)
Enzymes [BR:
sof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NCTC11214_03981 (dbpA)
Ribosome biogenesis [BR:
sof03009
]
Prokaryotic type
rRNA helicases
NCTC11214_03981 (dbpA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
HGD-D
Motif
Other DBs
NCBI-ProteinID:
VDZ62068
UniProt:
A0A3S5D7U3
LinkDB
All DBs
Position
1:3652797..3654179
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AA seq
460 aa
AA seq
DB search
MSTVSFSSLPLPAEQLANLNELGYAEMTPVQAAALPAILNGQDVRAKAKTGSGKTAAFGI
GLLDKINVSQVATQALILCPTRELADQVSKELRRLARFTQNIKILTLCGGQPMGAQLDSL
VHAPHIVVGTPGRIQEHLRKKTLVLDEVKVLVLDEADRMLDMGFADDIDQVISYTPPQRQ
TLLFSATYPAGIERISDRVQRAPLSVEVDDGDAPTTIAQRFYETTRDQRPALLVAAIRHF
QPTSCVVFCNTKRDCQSVFEALEARGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATD
VAARGLDIKDLELVVNYELSFDPEVHVHRIGRTGRAGMSGLAISLCAPQEMTRAHALEEY
LDCKLQWASVSELSGASTAPLEAEMATLCIDGGRKAKIRPGDILGALTGEAGLTAAEVGK
IDMFPVHAYVAIRKASARKALQQLQQGKIKGKSCKARLLK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacagtttccttttcttccctgccgctgccagccgaacagttggccaacctcaat
gaactggggtatgccgaaatgacaccggtacaggctgccgcgctgcctgccatcctcaac
gggcaagacgtgcgcgccaaggcaaaaaccggcagcggcaagacggcggcgttcggtatt
ggcctgctggacaaaatcaacgtcagccaggtggcgacccaggcgctgattttgtgtcca
acgcgtgagctggccgatcaggtcagcaaagagctgcgccgcttggcgcgttttacgcaa
aacatcaaaatccttaccctgtgtggcggtcagccgatgggcgctcagctggattcgctg
gtgcatgcgccgcatatcgtggtgggaacgccgggccgtatccaggaacacctgcgtaag
aagactctggtgctggatgaggtgaaagtgctggtgctggacgaagccgaccgcatgctc
gacatgggctttgccgacgacattgaccaggtaatcagctacacgccgccgcagcgccaa
acgctgctgttttccgcgacctatcccgcgggcatcgagcgcatcagcgaccgggtgcaa
cgcgcgccgttgagcgtggaagtcgacgacggcgacgcgccaaccaccatcgctcagcgc
ttttacgaaaccacccgcgatcagcgtccggcgttgttggtggccgccattcgccatttt
cagccaacgtcttgcgtggtgttctgcaataccaaacgcgattgtcagagcgtgtttgaa
gcattggaggcacgcggcatcagcgtgctggcactgcatggcgatctggagcagcgcgat
cgcgatcaggtgctggtgcgttttgccaaccgcagctgtcgcgtgctggtagcgaccgac
gtcgccgcacgcggtctggatatcaaggatcttgaactggtggtcaattacgaactgtcg
ttcgacccggaagtgcatgtgcaccgcattggccgtaccggccgtgccggcatgagcggg
ctggccattagcctgtgtgcgccgcaggaaatgacacgcgcccacgcgctggaagagtat
ctggactgcaagttgcaatgggcgtcagtcagtgaattgagcggtgcgtcaacggcaccg
ctggaagcggaaatggccacgctgtgcattgacggcggccgcaaggcgaagattcgcccc
ggcgatattctcggggcgttgaccggagaggcgggtctgaccgcggccgaggtcggtaaa
atcgatatgttcccggtgcacgcctacgtggctatccgcaaggccagcgcgcgcaaggcg
ttgcaacaattgcagcagggcaagatcaaaggcaaaagctgcaaggcgcggctgctgaaa
taa
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