Serratia odorifera: NCTC11214_04119
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Entry
NCTC11214_04119 CDS
T06612
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sof03016
]
NCTC11214_04119 (rnd)
Enzymes [BR:
sof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NCTC11214_04119 (rnd)
Transfer RNA biogenesis [BR:
sof03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC11214_04119 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
VDZ62479
UniProt:
A0A3S4HRC8
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All DBs
Position
1:3764725..3765846
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AA seq
373 aa
AA seq
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MNYTLITTDAGLQQVCEQARKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPI
KQWQPFVDLLADSAVVKFLHAGSEDLEVFLNAFNTLPTPLVDTQILAAFTGKPLSCGFAT
LVAQYMQVELDKSESRTDWLARPLTERQCVYAAADVFYLLPMARQLVQETEQAGWTAAAS
SECLLLCQRRSETLAPELAYREITNAWQLRARQLGCLQKLAEWRLRQARERDLAVNFVVR
EENLWAVARHMPGSLGELDALGLSGPEIRYHGKTLLALVEEANQMDESALPPPVASLIDQ
PGYKKVFKDIKAAIVTVSEQSGLSSELLASRRQINQLLNWHWKLKNGDGLPELISGWRAE
LLAEPLQAILKNY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatacgttgatcactaccgacgccggattgcagcaggtctgcgaacaggcaaga
aaacatgcgcagattgcgctcgacaccgaatttgtcagaacgcgtacctactatccgcag
ttaggcctgatccagttatacgatggtgaacaactctccctgattgatccactgccaatc
aaacaatggcagccgtttgtcgatctgctggccgacagtgcagtggtcaagttcttgcac
gccggtagcgaagatctggaggtgtttttgaacgccttcaatacgttgcccactccgctg
gtcgatacgcagatcctggccgcctttaccggcaagccgctgtcgtgcggttttgccact
ctggtggcgcaatacatgcaggtcgaactggataaaagcgaatcgcgtaccgactggctg
gcgcgtccattgaccgaacgccagtgcgtgtatgccgccgccgacgtgttttatctgttg
ccgatggccaggcagttggtgcaggaaaccgaacaggccggctggaccgctgccgccagc
agcgagtgcctgctgttgtgccaacgccgcagcgaaacgctggcgccggaactggcctac
cgtgaaatcaccaacgcctggcagctgcgcgcgcgtcagttgggctgtctgcaaaagctg
gcggagtggcggttgcgtcaggcgcgtgaacgcgatctggcggttaattttgtggtgcgt
gaagaaaatctgtgggcggtagcgcgtcatatgccggggtcgttgggggagctggatgcc
cttggcctgagtggtccggaaattcgctatcacggtaaaaccctgctggcgctggtcgag
gaagccaaccagatggacgagagcgcgttgccgccaccggtcgcgagcctgatcgaccag
cctggttacaagaaagtgttcaaggatatcaaggcggcgatcgttaccgtcagcgaacaa
agcggtctcagcagcgagctgttggcatcgcgacgtcagatcaaccagttgctcaattgg
cactggaaattgaaaaacggcgacggtctgccggaattaatcagtggttggcgtgcggaa
ttattagccgaacctttgcaggctattctgaagaattattaa
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