Serratia odorifera: NCTC11214_04221
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Entry
NCTC11214_04221 CDS
T06612
Symbol
topA_2
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sof03032
]
NCTC11214_04221 (topA_2)
03400 DNA repair and recombination proteins [BR:
sof03400
]
NCTC11214_04221 (topA_2)
Enzymes [BR:
sof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC11214_04221 (topA_2)
DNA replication proteins [BR:
sof03032
]
Prokaryotic type
DNA Topoisomerases
NCTC11214_04221 (topA_2)
DNA repair and recombination proteins [BR:
sof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC11214_04221 (topA_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
VDZ62777
UniProt:
A0A3S4EG82
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All DBs
Position
1:3857320..3859917
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKSADSTENKAKKKVK
KDATAALVNRMGVDPYHGWKAHYEILPGKEKVVAELKNLAENADHIYLATDLDREGEAIA
WHLREVIGGDDTRFSRVVFNEITKNAIQQAFKAPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEFWELHADLLAKDDTALRMEVTH
AGGKPFKPVNRDQTHAALNLLEKARYTVLDREDKPTSSKPGAPFITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDALNMVRGYIGDNFGDKYLPKAPNHYSSKEN
SQEAHEAIRPSDVSVVAEQLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVQAGDY
QLRAKGRTLRFDGWTKVMPALRKGDEDRTLPYVEIGSELDLQQLLPSQHFTKPPARYSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTARMEDGLDQVANNHAEWKAVLDEFFAEFSEQLERAEKDPEEGGMRPNQMVLTSIACP
TCGRQMGIRTASTGVFLGCSGYALSPKERCKTTINLVPETEVLNVLEGDDAETNALRARR
RCQKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRIKGYDGPVVECEKCGSEMHL
KMGRFGKYMGCTNDECKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELQRFKDRLPEKLRYLADAPVADPEGNKTLVRFSRKTKQQYV
SAEKDGKATGWTAFFIDGKWVETKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagccaaaactattaataaatat
ttaggaaatgactacgtggtgaagtccagcgtgggtcatatccgtgatttgccgaccagt
ggctcagccagcaaaaagagcgctgactcaacagaaaacaaagccaagaaaaaagttaaa
aaagacgcaacggcggcgctggttaatcgaatgggcgttgacccgtatcatggctggaaa
gcacattatgaaattctgccgggtaaagagaaagttgttgccgagttaaaaaatctggcg
gaaaacgccgaccacatctacctcgcaactgacttggaccgcgaaggggaagccattgcc
tggcacctgcgggaagtgatcggcggagacgatacgcgttttagccgcgtggtatttaac
gaaattaccaaaaacgccatccagcaggcctttaaagcgccgggtgagttgaatatcgat
cgtgtcaatgcgcagcaggcgcgtcgctttatggaccgcgtggtgggctatatggtttcg
ccgctgctgtggaagaaaatcgcccgcggcctgtccgccggacgtgtgcaatccgttgcg
gtgcggttggtggtagagcgcgagcgcgatatcaaggccttcgtgccggaagagttctgg
gaactgcacgccgacctgctggcgaaggatgataccgcgctgcggatggaagtgacccat
gccggcggtaagccgttcaaaccggtcaatcgcgatcagacccatgcggcgctcaacctg
ctggaaaaagcccgttatacggtgctcgatcgtgaagacaagccgaccagcagcaaaccg
ggcgcgccgttcattacctcgacgctacagcaggccgccagtacgcgtctgagcttcggc
gtgaagaaaaccatgatgatggcgcaacggctttatgaagctggccacatcacctacatg
cgtaccgactctaccaacctgagccaggatgcgctgaacatggtgcgtggttacattggc
gataacttcggcgataaatacctgccgaaagcgcctaaccactacagcagcaaagaaaac
tcgcaggaagcgcacgaagcgattcgtccttccgacgtcagcgtggtggcggagcagctc
aaagacatggaagcggacgcgcagaagctgtatcagctgatctggcggcagttcgtggcc
tgtcagatgacgccggcgcaatacgattccaccactctgacagtacaggccggcgactat
cagctgcgcgccaagggccgtacgctgcgtttcgacggttggaccaaagtgatgccggct
ctgcgcaaaggcgatgaagatcgcaccttgccgtacgttgaaatcggtagcgagctggat
ctgcaacagctgctcccaagccagcacttcaccaagccgccggcgcgttacagcgaagcg
tcgctggtcaaagagttggaaaaacgaggtatcggccgtccgtcgacctacgcgtcgatc
atttcgaccattcaggatcgtggttacgtgcgggtggaaaaccgccgtttttacgccgag
aaaatgggcgaaatcgtcaccgatcggctggaggaaaacttccgcgaactgatgaattac
gacttcaccgcgcgcatggaagacggcctggatcaggtggcgaacaatcacgccgaatgg
aaagcggtactggatgagttctttgccgaattcagcgaacagctggaaagggcagaaaaa
gatccggaagaaggcggcatgcggccaaaccagatggtgctgaccagcatcgcctgcccg
acctgtggtcgtcagatggggattcgtaccgccagcaccggtgtgttcctcggttgctct
ggctacgcgctatcgccgaaggagcgctgcaagaccaccatcaatctggttcccgaaacg
gaagtgctcaacgttctcgaaggggacgatgcggaaaccaatgccttgcgtgcccgtcgc
cgctgccagaaatgcggtacggcaatggatagctatctgattgataaccagcgcaagctg
cacgtctgtggtaataatccggcgtgtgacggttatgagattgaagagggtgagttccgc
atcaaaggctacgatggcccggttgtggaatgcgaaaagtgtggctctgagatgcacctg
aaaatggggcgtttcggcaagtacatgggctgcaccaacgacgagtgtaaaaacacccgc
aagatcctgcgcaacggtgatgtcgcgccgccgaaggaagatccggttccgttgccggag
ttgccgtgcgaaaagtctgacgcctatttcgtgttgcgtgatggcgcggccggtgtgttc
ctggctgccaataccttccctaaatcgcgcgaaacccgtgcgccgctggtggaagagttg
cagcgcttcaaggatcgcctgcctgaaaaactgcgctacctggcggatgcgccggttgcc
gatccggaaggtaacaagacgctggtgcgctttagccgtaagaccaagcagcagtatgtg
tctgccgagaaagacggtaaggctaccggctggaccgcgttcttcatcgacggcaagtgg
gttgaaaccaagaagtaa
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