Serratia odorifera: NCTC11214_04253
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Entry
NCTC11214_04253 CDS
T06612
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sof03016
]
NCTC11214_04253 (rnb)
Enzymes [BR:
sof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC11214_04253 (rnb)
Transfer RNA biogenesis [BR:
sof03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NCTC11214_04253 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
VDZ62874
UniProt:
A0A447KY36
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All DBs
Position
1:complement(3888267..3890201)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRI
VATVHTEKEREIAEPETLVEPFLSRFVGRVQKKDDRLSIVPDHPLLKDAIQCRPGRELTH
DFQAGDWAVAEMRRHPLKGDRSFHAELTDFITNADDHFAPWWVTLARHNLEKEAPEMAAT
HQPTATLAREDLTGLDFVTIDSASTEDMDDALFVQENADGTLQLTIAIADPTAFVDQGSA
LDDIARKRAFTNYLPGFNIPMLPRDLSDNLCSLRANERRPVLACRVTIAADGALGSDIHF
FAAEIESKAKLVYDEVSDWLDGIAGWQPPSEAIAQQITLLKRVCDARNGWRHQHALVFKD
RPDYRFVLGEKGDVLDIITEQRRTANRIVEECMIAANVCAAVVLRDRLGFGIYNVHTGFD
PALVEQAVSVLQANGVQAEAEKLLTLEGFCELRRHLDAQPTQFLDSRIRRFQTFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAIISEQAAQKPQEAITVQLAERRRLNRM
AERDVGDWLYARFLQDKAGTNTRFKAEIIDVTRGGLRVRLLENGAVAFIPAPFIHAVRDE
LVCSQDTGTVQVKGDVVYRQSDSLQVTIAEVRMETRSVIARPAP
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagcttaaacagcaacttcactctcaaaccccg
cgtgttgaaggcgtagtaaaagggactgagaaaggctttggctttttagaggtcgatggc
caaaagagctattttatcccgccgccgtacatgaaaaaagtcatgcatggcgaccgcatc
gtcgccaccgtccacaccgagaaagaacgtgaaatcgccgagccggaaaccctggtcgag
ccattcttgtcacgctttgtcggtcgggtacagaagaaagacgatcgcctgtcaatcgtg
ccggatcacccgttgctgaaagatgcgattcaatgtcgtccagggcgtgaactgacacat
gacttccaggccggcgattgggcggtggcggaaatgcgtcgacacccgctgaaaggtgac
cgtagcttccatgccgagctgactgatttcattaccaacgccgacgatcactttgcgcca
tggtgggtcacgctggcacgacataatctcgaaaaggaagcgccagaaatggcggctacc
catcagccgaccgccactctggcgcgtgaagatctgaccggtctggattttgtcaccatc
gacagcgccagcaccgaagatatggatgatgcgctgtttgttcaggagaacgccgacggt
accctgcaactgaccatcgctatcgccgacccgaccgccttcgtcgatcagggcagcgcg
ctggatgacattgcccgcaaacgcgcctttaccaactacctgccgggtttcaacatcccg
atgttgccgcgcgacctgtccgacaatctgtgctcgctgcgcgccaatgagcgtcgcccg
gtactggcttgccgcgtgaccatcgccgctgacggcgcgttgggcagcgatatccatttc
ttcgccgccgaaatcgaatcgaaagccaaactggtgtatgacgaagtctccgactggctg
gacggcattgccggctggcaaccgccaagcgaggctatcgcccagcagattaccctgctc
aagcgggtctgtgatgcgcgcaacggctggcgtcaccagcatgcgctggtgttcaaggat
cggccggactatcgctttgtcctcggcgagaaaggcgacgtgctggacatcatcaccgag
caacgtcgtaccgccaaccgcatcgttgaagagtgcatgattgccgccaacgtctgcgcc
gccgtggtgctgcgcgatcgtctggggttcggcatctacaacgtgcacaccggcttcgac
ccggcgctggtggaacaggcagtcagcgtactgcaggccaacggggtacaagccgaggcc
gaaaaactgctgacgctggaaggcttttgcgagctgcgccgtcaccttgacgcacagccg
acgcaattcctcgacagccgtattcgccgtttccagaccttcgccgaaatcagcaccgag
ccgggcccgcactttggcctcgggctggaagcttacgccacctggacgtcacccatccgt
aaatacggcgatatggtcaaccaccgcctgctgaaagccattatcagcgaacaggccgcg
cagaaaccgcaggaagcgatcaccgtccaattggcggagcgtcgccgtctgaaccggatg
gcggaacgcgacgtcggcgattggctgtatgcccgttttctgcaagacaaggccggcacc
aatacccgcttcaaggcggaaatcatcgacgtcacccgcggtggactgcgtgtccgtttg
ctggaaaatggcgccgtggcgttcatccctgctccattcatccacgcggtgcgcgacgag
ctggtgtgtagccaggataccggcaccgtgcaggtgaaaggcgacgtggtttatcgccag
agcgacagcctgcaagtcaccatcgccgaagtgcggatggaaacccgcagcgtgatcgcc
cgcccggcaccataa
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