Serratia odorifera: NCTC11214_04721
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Entry
NCTC11214_04721 CDS
T06612
Symbol
kdgR_3
Name
(GenBank) Pectin degradation repressor protein kdgR
KO
K19333
IclR family transcriptional regulator, KDG regulon repressor
Organism
sof
Serratia odorifera
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sof03000
]
NCTC11214_04721 (kdgR_3)
Transcription factors [BR:
sof03000
]
Prokaryotic type
Helix-turn-helix
IclR family
NCTC11214_04721 (kdgR_3)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
HTH_24
HTH_5
HTH_11
TrmB
MarR_2
HTH_45
Fe_dep_repress
Mga
MarR
FUR
Rrf2
PadR
HTH_DeoR
HTH_34
HTH_6
HTH_26
Dimerisation2-like_dom
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
VDZ63939
UniProt:
A0A3S4DQV6
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All DBs
Position
1:complement(4333486..4334277)
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AA seq
263 aa
AA seq
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MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKSLGY
VAQEGESEKYSLTLKLFELGAKSLQNVDLIRSADIQMRELSNHTRETIHLGALDEDSIVY
IHKIDSLYNLRMYSRIGRRNPLHSTAIGKVLLAWRDRAEVNDILSQVEFTRSTPHTITSA
ADLLPVLDKVRTQGFGEDIEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTIRFSEDAKSD
YVRQLHNAARIISQQQGYHDYPF
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggctaacgcagatctagataaacaaccggattctgtttcatcggtgctcaaggtgttc
ggtatcttgcaagcactgggcgaggagcgcgagatcggcattaccgaactgtctcagcgg
gtgatgatgtctaaaagcaccgtctaccgtttcctgcaaaccatgaagtcgctgggttat
gtagcgcaggagggagaatcggaaaaatattctcttaccctcaaactgttcgaactgggc
gccaagtcgttacaaaatgtcgatctgatccgcagcgccgacattcagatgcgtgagttg
tccaaccacacccgtgaaaccattcacctgggtgcgctggatgaagacagcatcgtatac
atccataaaatcgactccctgtataatctgcgcatgtattcgcgcatcggccggcgtaat
ccgttgcacagtaccgccatcggtaaggtgctgctggcatggcgtgaccgtgcagaggtg
aacgatattctgtctcaggtggagtttacccgcagtaccccgcataccattaccagcgcc
gcggacctgttgccagtgctggataaagttcgcacgcaagggtttggcgaggatatcgaa
gagcaggaagaagggctgcgttgcattgcggtaccggtgttcgaccgttttggcgtggtg
attgccgggctgagcatctccttcccgaccattcgtttttcggaagatgcgaaatccgat
tacgttcggcagttacataacgccgcgcgtattatctctcaacagcagggttatcacgat
tatccgttctga
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