Serratia odorifera: NCTC11214_04925
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Entry
NCTC11214_04925 CDS
T06612
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sof
Serratia odorifera
Pathway
sof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11214_04925 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sof03019
]
NCTC11214_04925 (rne)
03009 Ribosome biogenesis [BR:
sof03009
]
NCTC11214_04925 (rne)
Enzymes [BR:
sof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC11214_04925 (rne)
Messenger RNA biogenesis [BR:
sof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11214_04925 (rne)
Ribosome biogenesis [BR:
sof03009
]
Prokaryotic type
rRNA processing factors
NCTC11214_04925 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
VDZ64341
UniProt:
A0A447L0T0
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All DBs
Position
1:4503046..4506477
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AA seq
1143 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLA
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQ
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAQPLEDAPMERKRPEQPALASFSLAADAPP
PAQETVAVAKPAAVAKQTAPAAVKPGLLGRLFGGLKALFAADEQPAVEEKPAETPKAENS
ENRRQDRRGQRRQGAGRKDRGERGDRNERGDRNERGDRNERGERPERGERRERGEGRDNR
EAREPRESRDEQRRNRRNAAQNAPVAAEAQSEEAAKAQREEQQQRREQRAERQRRRQEEK
RQAQQEVKALESVEAPVAAATDEDQDDRHQQPAQRRQRRQLTQRVRIQSAEEELQSAAEE
LLAPKTDAVKPTSTAEDSVKLLPETVAASPEDEAQGEARNGENGMPRRSRRSPRHLRVSG
QRRRRYRDERYPTQSPMPLAGAFVSPEMASGKVWVSYPVTQAISAVEEAEATAEATNIAA
ENVMTNDAVAAASVAAPRVADASEVVQATAEQPTVETETAPAATQQIAAEPATAEPVINS
QLAEDVAETAETPVSQAATSAEDSAPAAAPEPIESVDAQPAPAADAELAPAVETVAATPA
EHAADETVADTVVEAPVEPAPQPVTEPVVAQAEMVVDEAPAVAEPAVAVATAAVKETHGA
TLYKHIASAPMTKAPAPAYQPEAPKQSDWHRPAFNFEGKGSAGGHAAATTATAPATKPQP
VND
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccctagtagat
ggacagcggctgtatgatttggacattgaaagcccgggtcatgaacagaaaaaggcgaat
atttacaaaggcaaaatcacccgcattgaaccaagtcttgaagctgcattcgtagattac
ggcgcagaacgacatggtttcctcccccttaaagaaatcgcccgcgaatacttccctagc
aattattcctcccatggccgccctaacatcaaagatgtgctgcgcgaaggccaggaagtc
atcgtacaggttgataaagaagaacgtggcaacaaaggcgccgccttgaccaccttcatc
agcctggcaggcagttacctggtgttgatgccgaacaacccgcgtgccggcggtatttct
cgccgtatcgaaggtgacgaccgcaccgaactgaaagaagcgttatcctcgctgcaatta
cccgacggcatgggcctgattgtccgcaccgcgggcgtcggcaaatctgccgaagcgctg
caatgggatctgtcattccgtctcaagcactgggatgccatcaagaaagccgccgaaggc
cgtcctgcacccttcctgatccatcaggaaagcaacgttatcgtgcgtgcattccgcgat
tatctgcgcccggacattggcgaaatcctgatcgacaacccgaaaattctcgacctggcg
aaagagcacattgccgcgctgggccgtccagatttcagcagcaaaatcaaactgtacagt
ggtgaaattccgctgttcagccattaccagatcgaatcgcaaattgagtcggccttccag
cgcgaagtgcgtctgccttccggcggttcgattgttatcgataccaccgaagctctgacc
gccattgatatcaactccgcgcgtgcaacccgcggtggcgatattgaagaaaccgcgttc
aataccaacctggaagcggctgatgaaatcgctcgccagttgcgcttgcgtgacctcggc
ggcctgatcgtcatcgacttcattgacatgacgccggtacgccaccagcgcgaagtggaa
aaccgtctgcgcgatgccgtccgtcaggaccgtgcacgtatccagattggccgcatttcc
cgctttggcctgcttgagatgtcccgtcaacgcctcagcccgtcgcttggcgaatccagc
catcacgtctgcccgcgctgtaacggcaccggtaccgtgcgtgacaacgagtcgttggca
ctgtccattctgcgcctgatcgaagaagaagcgctgaaagaaaacaccaaagaagttcac
gctatcgtgccggttcaggtggcatcttacctgctgaacgaaaaacgtgaatccgtcagc
gccattgaaaagcgtcagggcggcgttaaagccatcatcgtgccaaacgatcagatgcaa
acgccacattattcggtattgcgcgtgcgcaaaggcgaagaaaccccaaccctgagctac
ctgctgccgaaactgcacgaagaagagatggctcagccgctggaagatgcgccaatggag
cgcaaacgtcccgaacaaccggcgctggcctccttctctctggctgccgatgccccaccg
ccggcgcaagaaaccgtggcagtggccaaacctgccgcggtcgccaagcaaacggcgcca
gctgctgtcaaacccggcctgctgggtcgtctgttcggtggtctgaaagcactgttcgcc
gcggatgaacaaccggcggtagaagaaaaaccggctgaaacgccgaaagctgaaaacagc
gaaaaccgtcgtcaggatcgtcgtggccaacgccgtcaaggcgccggccgcaaagatcgc
ggcgaacgcggtgaccgtaacgaacgcggtgaccgtaacgagcgtggtgaccgtaacgag
cgtggtgaacgtccagaacgtggcgaacgtagagaacgtggcgaaggccgcgataatcgc
gaagcgcgcgaacctcgcgagtcgcgtgacgagcagcgccgtaaccgtcgcaacgcagcg
caaaacgcgccggttgccgccgaagctcagtcggaagaagccgccaaggcgcagcgcgaa
gaacagcagcaacgccgtgaacagcgtgccgaacgccaacgtcgccgtcaggaagaaaaa
cgtcaggctcagcaggaagtgaaggcgctggaaagcgttgaagcgcctgtggcagcagca
accgatgaagatcaggacgatcgtcatcagcagccggcgcagcgccgtcaacgtcgtcag
ttgacgcagcgtgtccgcattcagtccgcagaagaagaactgcagagtgcagcggaagag
ctgttggcaccaaaaaccgacgcagtgaagccaacttcgacagcggaagacagcgtgaaa
ctgttgccggaaaccgtcgcagcgtcgcctgaagatgaagcacagggtgaagcacgcaac
ggtgaaaacggtatgccgcgtcgttcacgccgctcaccgcgccatctgcgcgtcagcggt
cagcgtcgtcgccgttaccgtgatgaacgttaccctacccagtcgccaatgcctctggct
ggcgctttcgtgtcgcctgaaatggcctctggcaaagtatgggtcagttaccctgtcacg
caagcgatttcagcggtagaagaagccgaagccactgccgaagcgaccaatattgctgct
gaaaacgttatgaccaacgacgcggtagcggcagccagcgttgctgcgccacgggtggct
gacgccagcgaagtggttcaggcaaccgccgagcagccaaccgttgaaaccgaaacggcg
ccagcagcaacgcagcagattgctgccgagccggcaacggccgaaccggtaatcaatagc
caactggccgaggacgtggcggaaaccgctgagaccccggttagccaggcagcaaccagc
gccgaagatagcgccccggccgcagcgccagagcctatcgaatcggtcgacgctcagcct
gcgccagcggctgacgctgaattggccccggcggttgaaaccgtagcggcgacgccggca
gaacacgcggcggatgaaaccgttgccgacaccgtggttgaagcgccggttgagcccgcg
ccacagccggtgaccgaaccggtggttgcccaagctgagatggtggtcgatgaagcgcca
gcggttgctgaaccggctgtggccgtcgccacggcggcggttaaggaaacgcatggcgcg
acgctgtacaagcatatcgccagcgcaccgatgaccaaagcgccagcgccggcttatcag
ccggaagcgccgaagcaaagcgactggcaccgccctgccttcaacttcgaaggtaaaggc
tctgccggcgggcatgccgcagccaccacggcaacggcaccagccaccaagccgcagccg
gttaacgattaa
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