Shewanella oncorhynchi: RA178_01065
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Entry
RA178_01065 CDS
T09381
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RA178_01065 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sog03021
]
RA178_01065 (rpoC)
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_01065 (rpoC)
Enzymes [BR:
sog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RA178_01065 (rpoC)
Transcription machinery [BR:
sog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RA178_01065 (rpoC)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RA178_01065 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
gerPA
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WMB73250
UniProt:
A0AA50KDX7
LinkDB
All DBs
Position
239497..243714
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFMSVAEVEKAYATG
AAELHARVKVRITETIIGDDGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAIDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVISCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKHVTNSDGKLVIVSRSSELAVIDELGREKERYKVPYGTVLEKLEEAAVEAGDVIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGTAGKEMRPMIRL
LGANGADLMIPGTEVPAQYFLPGSAIVNLEDNAQINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTDFLEGEQAEVSRVKIANRELIAQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKTRNEARAKKNEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaaacgtttgaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtaacccaaacgaaagtacgtcgtgag
cgtatgggtcacatcgaactggctagcccagttgcgcacatttggttcttaaaatcactg
ccgtcacgtattggcttaatgctggatatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatcatttgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaacttatctggatgcattagaagaatacggtgatgagttcgaagctaaaatg
ggtgccgaagcagtacttgaactgttacgtgctatcgatttagcgaaagaaatcgaacaa
atgcgtgaagaattgccttcaatcaactctgagactcgtcgcaagaaagtgactaaacgt
cttaagttgatggaagcattctacacttcaggcaacaagcctgagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgttggttccgctcgatggcggccgcttc
gcgacttcagatcttaacgacctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccagacattatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgcgctattagataacggtcgtcgtggtcgtgctattaccggttctaac
aagcgtcctctgaaatctttggctgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttgttgggtaagcgcgtcgactattctggtcgttcggtaattaccgtaggtcctact
ctacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctagaaggtcgtggcttagctactaccatcaaagcggctaagaagatg
gttgagcgtgaagtggcagaagtatgggacgttctggatgaagtgatccgcgaacatcca
gtgatgctcaaccgtgcaccaacactgcacagactgggtatccaagcgttcgaacctgta
ctgattgaaggtaaagcgatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagccaacggcgagcctgttatc
accccgtctcaagacgtggtattgggtctgtactacaccagccgtgagcgtattaacggc
cgtggtgaaggtatggcatttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgttaaagttcgtatcactgaaaccattattggtgacgat
ggtgagcgcactgaacaacgccgtatcgttgatacgactgtgggtcgtgctttgctgtca
cttattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atctctaaactgttgaacacctgttatcgtcaactgggtctgaaagatactgttatcttc
gctgaccaattgatgtataccggtttccgttttgcaaccatctctggtgcctctgtaggt
atcgatgacatggttattccagacgagaaatacaccttagttgctgatgcagaagcggaa
gttcttgaaattcaagagcagttccaatctggtctagtcacagccggtgagcgttacaac
aaagttatcgatatctgggctagtgccaacgaaaaagtttctaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggtgttgaagagaaacaagcctcgtttaac
agcatctatatgatggctgactcaggcgctcgtggtagtgccgcacagatccgtcagttg
gcgggtatgcgtggtctgatggctaagccagacggctcaatcatcgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtactccagtactttatttctactcacggtgcgcgt
aaaggtctagccgatacggcattgaagacagcgaactcgggttacctgactcgtcgtctt
gtagacgttgcacaagatttagtggttatcgaagacgattgtggtactcacgaaggtcta
accatgaaaccgctgattgaaggtggtgatgtggttgagccgttacgtgaacgcgtactg
ggtcgtgtggttgcgattgatgtgttctatccaggcactgaagacgtattagcaccacgt
aacacgctactcgacgaagcatggtgtgacaagttagaagagcattcaatcgacgaagtg
attgtacgttctgttatttcttgtgataccgatttcggtgtgtgtgcagcttgttacggt
cgtgacttggctcgtggtcatattattaaccacggtgaagccatcggtgttgtggcagca
caatctatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatctagagcgtctgcagaaaacaatgtccaagtgaaaaactcgggttcattgaaactg
cataatgctaagcatgtgactaacagtgacggcaaactggttatcgtttctcgttcttct
gaactggctgttattgacgagctgggtcgtgagaaagagcgttataaagtgccatacggt
actgtgctcgagaaactagaagaagcggctgttgaagcgggcgatgttatcgctaactgg
gatccacatactcacccaatcatttctgaagtggcgggtagtatcaagttcgtcgacatg
attgatggtgtcactatgacacgtcaaacagacgaactaacgggtctgtcatcaatcgtg
atccttgacgttggtcagcgtggtactgcgggtaaagaaatgcgtccaatgatccgtctg
cttggcgctaatggtgctgacttgatgatcccaggtactgaagtaccagcacaatacttc
ttaccaggtagtgcgatcgttaacttagaagataacgcgcaaatcaacgtgggtgacgca
ttagctcgtattcctcaggaatcgtccaaaactcgcgacatcaccggtggtctgccacgc
gttgctgacttgttcgaagcgcgtaagccaaaagagcctgctattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggtaagcgtcgtttggtgattacacctgct
gatggcggcgatcattatgaagagatgatccctaagtggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttatcgctgacggtccagaagcggcacacgacatt
ctgcgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggacgtt
taccgtctgcaaggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcagatg
ctgcgtaagtgtcttatcacttctgccggtgacactgacttcctcgaaggggaacaagct
gaagtgtcacgcgtgaagatcgctaaccgcgaactgatcgcccaaggtaaagtgcctgcg
acctttgaacgtgaactactgggtattactaaagcatctctggcaacagaatcctttatc
tcagcagcatcgttccaagaaactacgcgcgtactgaccgaagccgccgtaggtggtaag
agcgatcaattacgtggtctgaaagaaaacgttatcgttggccgactgatcccagccggt
actggttacgcttatcacaagactcgtaatgaagcgcgtgcgaagaaaaacgaacctgta
gtagtgaacaagatcactgcaagtgaagccgaacagaacttggccgatctcttaaacttg
gctggtagccaagattaa
DBGET
integrated database retrieval system
