Shewanella oncorhynchi: RA178_01945
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Entry
RA178_01945 CDS
T09381
Name
(GenBank) AMP-binding protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog00061
Fatty acid biosynthesis
sog00071
Fatty acid degradation
sog01100
Metabolic pathways
sog01212
Fatty acid metabolism
sog02024
Quorum sensing
sog04146
Peroxisome
Module
sog_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
RA178_01945
00071 Fatty acid degradation
RA178_01945
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
RA178_01945
09145 Cellular community - prokaryotes
02024 Quorum sensing
RA178_01945
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sog01004
]
RA178_01945
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sog04147
]
RA178_01945
Enzymes [BR:
sog01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
RA178_01945
Lipid biosynthesis proteins [BR:
sog01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
RA178_01945
Exosome [BR:
sog04147
]
Exosomal proteins
Exosomal proteins of breast milk
RA178_01945
Exosomal proteins of breast cancer cells
RA178_01945
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
SH3_1
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
WMB73414
UniProt:
A0AA50KEF8
LinkDB
All DBs
Position
complement(407135..408799)
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AA seq
554 aa
AA seq
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MDTAIKTPIEMLAHWANTQGDQVYLRQPIKGQFLDFTWAEVQEKVQQLAGALHHLGLERG
DKIAVLSKNCAEWFITDLALMHGGYVSVPIYPTANTDTIRYVLQHSGAKAIFLGKLDHWA
DQEAGVGGELLRLAMPYDTMPAQYQWEQLLKLGYPLVNAPLPTPDQVMTLIYTSGSTGQP
KGAIQTFASYGWTCQAVVRDLRTDGDDRLLSYLPLAHITERVAIEGSSFYSGSVVAFVES
LDSFVVDVQRAKPTVFFSVPRLWSLFQKNIIDKIGVSKLNLLLKIPLLSSFVKYKIHKGL
GLNHCRLLGSGSAPIPPSLIHWYHSIGLNICEAWGMTENCAYSIINYPFDARKIGTVGRP
VEDCQIRQGEDGELLLKSPGLMTAYYLQPEATAAAFDADGFFHTGDLCSIDADGCVTITG
RVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVIGSGLPHPVALVQLSEGANLQAREEV
RTSLKATLDSVNPHLESHEHVDAIVVVSDPWTIENDALTPTLKIKRHVLEKAFSERVDGI
RGAQVRWEDELTQK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggatacagcgattaagacgccaattgaaatgctggcgcactgggctaatactcagggg
gaccaagtctatttacgccaaccgatcaagggtcaattccttgattttacttgggctgaa
gttcaagaaaaagttcaacaacttgccggagccttacatcacttaggcttagagcgtggt
gataaaattgccgttctctctaaaaactgtgccgaatggtttatcaccgacctcgcgttg
atgcacggcggctatgtcagcgtacctatttaccctaccgccaacacagatactattcgc
tatgtgctgcaacacagtggcgcaaaagccatttttctcggcaagcttgaccattgggct
gaccaagaggctggtgtcggcggcgagctactacgccttgccatgccctatgatacgatg
ccagcacaatatcaatgggaacaattgcttaagctaggctatcccttagttaacgccccg
ctgcctactccagatcaagtgatgacactcatctatacctctggctcgactggccaacct
aagggcgcgattcaaaccttcgccagctatggctggacttgccaagcggtagtccgtgac
ctgcgcaccgatggcgacgatagacttttatcctatttacccttagcccacatcacagag
cgcgttgcgattgaaggatcatccttctactcaggtagtgtggtggctttcgttgaaagt
ctcgactccttcgttgtcgatgttcaacgggcaaaaccaacggtattcttctcggtacca
cggttatggagcctgtttcagaaaaacattatcgacaaaattggggtcagtaaacttaat
ctattgttgaaaatcccactgcttagcagctttgtgaaatacaaaatccataaaggttta
ggcttgaaccattgtcgtctactcggctctggctcggcgcctattccgccatcactgatc
cactggtatcacagtattggtcttaatatctgcgaagcttggggtatgacagaaaactgt
gcctattcgatcatcaactatccttttgatgcgcgtaaaattggtactgttggccgccca
gttgaggattgccagatccgccaaggcgaggatggtgagctactgctcaagagcccggga
ttaatgacagcttattatctgcagcctgaagctactgcagcggcattcgatgctgatggt
ttcttccacacaggcgatctgtgctcaattgatgccgatggttgtgtcactattactggc
cgtgtaaaagacaactttaaaaccgccaagggcaaatatgtagcgcccgtgcctatcgaa
cgtaaattggcgcaggatccccatgttgaactgatttgtgtgattggctctggtctgcca
catcccgtcgcactagtgcagttatccgaaggggcaaatctacaagcccgcgaagaagtc
cgcacctcactcaaagcgacactcgatagcgttaatccgcacttagagtcacacgaacat
gtcgatgcgattgtcgtggtcagtgatccttggacgattgaaaatgatgcgctcacgcct
accctcaaaatcaaacgccatgtgcttgaaaaagcctttagcgaacgagttgacggcatt
cgtggcgcccaagtccgctgggaagatgaattaactcaaaaataa
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