Shewanella oncorhynchi: RA178_02810
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Entry
RA178_02810 CDS
T09381
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sog03009
]
RA178_02810 (rimO)
Enzymes [BR:
sog01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
RA178_02810 (rimO)
Ribosome biogenesis [BR:
sog03009
]
Prokaryotic type
ribosomal protein modification factors
RA178_02810 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
Methyltransf_2
UPF0180
CLP1_P
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
WMB73570
UniProt:
A0AA50Q789
LinkDB
All DBs
Position
complement(603883..605301)
Genome browser
AA seq
472 aa
AA seq
DB search
MTVETFKPKQTTTLDIPVKTLEAASTNAVTTGNRIGFVSLGCPKNLVDSERILTQLRIDG
YEVTNSYDNADLVIVNTCGFIDAAVEESLDAVREALEENGKVIVTGCLGAKENQIREVHP
DVLEITGPHSYEAVLKHVHKYVPKPEHNPFTSLIPQTGVKLTPKHYAYLKISEGCDNRCT
FCIIPSLRGDLDSRPAGSILDEAKRLVESGVQEILVVSQDTSAYGKDKGGRTDFWNGMPV
KQDITSLARQLGKMGAWVRLHYIYPYPWVDDLIPLMAEGLILPYLDIPMQHASPRILKMM
KRPGRVDRQLEAIQRWREICPDLVIRSTFIVGFPGETEEDFQILLDFLKEARLDRVGCFK
YSEVDGAVANTIAELISEEVKEDRYHRFMELQAEISAERLARFVGRTLDILIDDVDEEGA
IGRSFADAPEIDGMVFINGETELEPGMLVRARITHSDEHDLWAEVVDADTQD
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgaaacttttaaacccaagcaaacgaccacgcttgatatcccagtcaaaaca
ttagaagcagcaagcactaatgctgttaccactgggaatcgcatcggtttcgtgtctttg
ggctgcccaaaaaacctcgtggattcagagcgtattctgactcagttacgcatcgacggc
tacgaagtcactaacagctacgacaatgccgacttagttatcgtcaatacctgcggcttt
atcgatgccgcggtggaagaatctctggatgctgtgcgtgaagccttagaagaaaacggc
aaagtgatcgtcactggctgccttggcgccaaagaaaaccaaatccgcgaagtgcaccca
gatgtattagaaatcactggcccacacagctacgaagcggtgttgaagcatgttcacaag
tacgtacctaagccagagcacaaccctttcacctcgttaatcccacaaactggagttaag
ttaacgcctaagcattacgcttatttaaagatttcagaaggttgcgacaaccgttgtact
ttctgcatcatcccttcgctacgtggcgatctcgacagccgcccagcgggcagcatctta
gatgaagctaagcgtttagtggaatcaggcgtacaagaaattctagttgtgagccaagac
acctcggcctacggcaaagacaaaggcggtcgtaccgatttttggaacggtatgccagtc
aagcaagacattactagcctagcgcgccaactgggtaaaatgggcgcttgggtgcgtctg
cattacatctatccatacccatgggttgacgatttgatccccttgatggccgaaggtttg
atcctgccatatttggatattccaatgcagcatgctagcccgcgcatcctcaagatgatg
aagcgtccaggccgtgttgaccgtcagttagaagcgattcaacgctggcgtgaaatctgc
ccagatctagtgatccgctcaaccttcatcgttggcttcccaggtgaaaccgaagaggat
ttccaaatcctgctcgatttcttgaaagaagctcgtctcgaccgcgtaggttgctttaaa
tattctgaagtcgatggcgctgtcgccaacactatcgctgagcttatcagcgaagaggtt
aaagaagacagataccacagatttatggaactccaagccgagatcagcgccgagcgttta
gcccgtttcgttggccgtactttagatattctgattgacgatgtcgacgaagaaggcgcc
attggccgcagcttcgccgatgcacctgaaatcgacggcatggtgtttatcaatggtgaa
actgagctggaacctggtatgttggttcgtgcccgcatcacccattcagatgaacacgat
ctgtgggctgaagtagtcgacgctgacacccaagactaa
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