Shewanella oncorhynchi: RA178_03005
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Entry
RA178_03005 CDS
T09381
Symbol
ssb
Name
(GenBank) single-stranded DNA-binding protein
KO
K03111
single-strand DNA-binding protein
Organism
sog
Shewanella oncorhynchi
Pathway
sog03030
DNA replication
sog03430
Mismatch repair
sog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RA178_03005 (ssb)
03430 Mismatch repair
RA178_03005 (ssb)
03440 Homologous recombination
RA178_03005 (ssb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sog03032
]
RA178_03005 (ssb)
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_03005 (ssb)
03029 Mitochondrial biogenesis [BR:
sog03029
]
RA178_03005 (ssb)
DNA replication proteins [BR:
sog03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RA178_03005 (ssb)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
RA178_03005 (ssb)
TLS (translesion DNA synthesis) factors
Other SOS response factors
RA178_03005 (ssb)
Mitochondrial biogenesis [BR:
sog03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Other Mitochondrial DNA replication factors
RA178_03005 (ssb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSB
SSB_1
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WMB73608
UniProt:
A0AA50KEY0
LinkDB
All DBs
Position
649199..649906
Genome browser
AA seq
235 aa
AA seq
DB search
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLF
GKLAEITGEYLRKGSQVYLEGKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQ
AQGAPMGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAYQAPAQQQYAPPAPAQQQGYGQ
PQAQQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcgtggtgttaacaaggtaattttggttggcaatttgggacaagatccagaa
gtgcgttatatgccaaacggtaatgcagtcgcaaacatcacagtagcgactagcgaatcg
tggaaagaccaacagggtcaacagcaagagcgtactgaatggcatcgtgtggttctgttc
ggcaaattagctgaaattaccggtgaatacctgcgtaaaggttcacaggtttaccttgaa
ggtaaactgcaaactcgtaagtggaaagaccaaagtggtcaagaccgttacagcactgaa
gtggttatcgaccaaagcggtagcatgcaaatgctaggtagccgtggtcaaggtggacaa
gcacaaggcgcgccaatgggcggcatgccacaaaacgcaggttatcaatctgcaccacaa
caagccgcgcctgcgcaaaatcaatatgcgccagcgcctcaagcagcacctgcttaccaa
gcgccagctcagcaacaatatgctccgccagcacctgcccagcagcaaggttatggtcag
ccacaggctcaacaaccacaacaaggtggttatgcgcctaagccacaagccgctccagca
ccagcttatcaagcgccagcagcaccggcacagcgtcctgcgccacaaccacagcaaaac
ttcactccagatttggatgatggctgggatgacgatattccgttttaa
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