Shewanella oncorhynchi: RA178_03355 Help Entry RA178_03355       CDS       T09381                                  Name (GenBank) RNA polymerase factor sigma-54   KO K03092   RNA polymerase sigma-54 factor Organism sog  Shewanella oncorhynchi Pathway sog02020   Two-component system sog02040   Flagellar assembly Brite KEGG Orthology (KO) [BR:sog00001]  09130 Environmental Information Processing   09132 Signal transduction    02020 Two-component system     RA178_03355  09140 Cellular Processes   09142 Cell motility    02040 Flagellar assembly     RA178_03355  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:sog03021]     RA178_03355 Transcription machinery [BR:sog03021]  Prokaryotic type   Bacterial type    RNA polymerase     Sigma factors      RA178_03355 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Sigma54_DBD Sigma54_CBD Sigma54_AID Motif Other DBs NCBI-ProteinID:  WMB73674 UniProt:  A0AA50Q3V1 LinkDB All DBs Position complement(737802..739280) Genome browser AA seq 492 aa AA seqDB search MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELEEDQFDATKTP VNQTLSDTDFSESSTLPPEKDSSTIDTAESLTKESMPDELPMDTTWDEVFTASPNSGPGG SREDDMPFQGETSEGLYEHLEWQKNLTPFSETDLAIATAIIDAIDDQGYLTQSTEEILEA MGNPEVELDEVEAVLKRIQHFDPIGVAARDLSECLLIQLSHFAADTPNLENARMLIKDHL DLIAARDFRLLMRKTKLKEDELRDGIALIQTLNPRPGLLITPNNDEYVIPDVSVSKKNGR WVVELNPDCMPKINVNQHYASMARSTKNQADSQFIRGHLQEAKWFIKSLESRNDTLLKVA NCIVQYQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPKGLFELKYFFS SHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGINVARRTIAKYREA MLIPPSNQRKSL NT seq 1479 nt NT seq  +upstreamnt  +downstreamnt atgaaagcgtcactccagctcaaactgggtcaacagttaaccatgacgccacaattacaa caggctatacgtctgttgcaactgtcgtcattagaactgcagcaagagatccagcaagca ttagattctaatccccttctcgagctggaagaggatcaattcgacgccactaaaacccct gtaaaccaaacgctatccgatacggatttcagtgaatctagcactctgccaccagaaaaa gacagctccaccatagacacggcagagtcgctaaccaaagaatccatgcccgatgagctc cccatggacaccacatgggatgaagtgtttaccgcctccccaaactcaggccccggcggc agtcgtgaagacgatatgcccttccaaggtgagaccagtgaaggtttgtacgaacactta gaatggcaaaaaaacctcacgccgttttctgaaaccgatttagccattgccaccgccatt attgatgccatcgacgatcagggctatctcacccaaagcactgaagaaattctcgaagcc atgggcaatcctgaagttgagcttgacgaagtcgaagccgtactcaagcgcattcagcat tttgatcccataggcgttgctgcacgcgatttaagtgaatgcctgctgatccaactgtcg catttcgccgctgatactcccaacctagaaaacgcccgcatgctgatcaaagatcattta gatctgatcgccgcccgtgattttaggttattgatgcgtaagactaaattaaaagaagat gaattaagggatggtatagcactcatccaaaccctcaatcctcgcccaggtttgttgatc acgcccaataatgacgaatacgttatcccagatgtgtctgtgtcgaagaaaaatggccgc tgggtcgttgagcttaatcctgactgcatgcccaaaatcaatgtaaatcaacattatgct tctatggcacgcagcacaaaaaaccaagccgatagccaatttattcgcggccatctgcaa gaggctaaatggtttattaagagtctagaaagccgtaacgacactttgcttaaagttgct aattgcatagtgcaatatcagcaaggtttctttgagtacggtgaagaagccatgaagcct atggtgcttaacgatattgccgaagcggtagaaatgcatgagtccaccatctcacgggtc acaactcaaaaatacatgcatacccctaagggactttttgaactaaaatacttcttctct agccacgtcggtactgacgatggtggtgagtgctcatccacagcaatcagagcctttata aagaaactggtggcagcggaaaaccagaaaaaaccattaagcgatagcaagatggcacaa cttctggcagaacaagggatcaacgtagcccgcagaaccattgcgaagtaccgagaggct atgcttattccaccttctaatcagcgtaaaagtttataa

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