Shewanella oncorhynchi: RA178_04240
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Entry
RA178_04240 CDS
T09381
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA178_04240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sog03019
]
RA178_04240
Enzymes [BR:
sog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RA178_04240
Messenger RNA biogenesis [BR:
sog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RA178_04240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
DUF2529
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
WMB73842
UniProt:
A0AA50KF46
LinkDB
All DBs
Position
complement(927915..929459)
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AA seq
514 aa
AA seq
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MSFTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGKDVMAAAQTGTGKTAGFTLPML
ELLSKGNRAQAGQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVPINPQIAKL
RHGVDVLVATPGRLMDLYNQKAVKFSQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQ
NLMFSATFSDEIRELAKGLVNDPVEISVTPRNAAATTVKQWVCPVDKSQKSALLIQLIKQ
NDWQQVLVFSRTKHGANRLAKSLEEAGIKAAAIHGNKSQTARTKALADFKNGQARVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSNEEIKLLNDIER
LINRVLDREMVEGFNHELPESRLGGGGKSSGKSVPSRRNTRSSNQPSSRDGAPRSAEHKD
GQRSGDVARGHKPNDKNPRHSGEASSAPRSDAKPRPPRSNDGRANSAGASRPTESRSGAG
ENRGQAGENPYANGPKKNTRRPNNGASRPRHSQD
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctgggcttatcggccccgatacttaaagccgttgccgaacaaggc
tacgacacaccttcgccaatccaagctcaagcaattcccgctgtgcttcaaggcaaagat
gtgatggcggccgcccaaacaggaacaggtaaaacagcaggtttcaccctacctatgctc
gaactcctgagtaaaggtaaccgtgcccaagcaggccaagtgcgcgcattagtgttaact
ccgacacgcgaattggcagctcaggttgcagaaagtgttgaaacctatggtaagaatttg
ccactgcgctcagcggtgatatttggtggcgtgcctatcaatccacaaattgctaaattg
cgccacggtgtcgacgtattagtcgccacgcctggtcgattgatggatctatataatcaa
aaagcggtgaaattcagccagcttgagatcttagtgttagatgaagccgaccgtatgctc
gacatgggctttatccgcgatatccgtaaaattttggccattttacctaagcaacgtcaa
aacctgatgttctcagccaccttctccgatgaaattcgtgagctggccaaaggcctagtc
aatgatccagtcgaaatttcggtcacgccacgtaacgcggcggcgaccacagtaaaacaa
tgggtttgcccagttgataagagccaaaaatcggcactcttgatccaactcatcaagcaa
aacgattggcaacaagtattggtattctcgcgcactaaacatggcgctaaccgtctggcg
aaaagccttgaagaggcaggtatcaaagccgccgctatccacggtaacaagagccaaacc
gcccgtactaaagccttagccgactttaaaaatggtcaagctcgcgtactggttgcgacc
gatatcgccgcccgcggtttagacatagaccaattaccacaagtggttaacttcgactta
ccgaacgtgccagaagattatgtgcatcgtatcggccgtactggccgcgctggcgcatcg
ggtcaagccgtgtcactggtaagtaacgaagaaatcaaactgctgaacgatatcgagcgt
ttaatcaatcgcgtattagaccgagaaatggttgaaggctttaaccatgaattgccagaa
tcacgtttgggtggcggcgggaaaagtagcggtaaatcagtaccaagccgtagaaatacc
cgcagctcaaaccaacctagctcacgcgatggtgccccaagaagcgccgagcataaagat
ggtcaacgcagcggtgacgtcgcgcgcggtcacaagccaaacgacaagaatccaagacac
agcggcgaagccagtagcgcaccccgcagtgatgccaagcctcgtccaccacgttcaaac
gatggccgagccaatagcgcaggcgctagtcgtccaactgaaagccgttcaggtgctggc
gagaatcgtggccaagcgggtgagaatccttacgccaatggcccaaagaaaaacacccgt
cgcccaaataacggtgcgagtcgtccaagacattcacaggattaa
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