Shewanella oncorhynchi: RA178_04375
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Entry
RA178_04375 CDS
T09381
Name
(GenBank) LysR family transcriptional regulator
KO
K21703
LysR family transcriptional regulator, low CO2-responsive transcriptional regulator
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sog03000
]
RA178_04375
Transcription factors [BR:
sog03000
]
Prokaryotic type
Helix-turn-helix
LysR family
RA178_04375
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
PBP_like
HTH_5
Motif
Other DBs
NCBI-ProteinID:
WMB73868
UniProt:
A0AA50Q7A4
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Position
962732..963730
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AA seq
332 aa
AA seq
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MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEP
LLESRDGRILPTLIGNELYRAACDTLSRFEDFDAFMQQAKGGSVGHINIGIVTTAKYVLP
RILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFSHPPSGDNVLSARIIKNPLQL
IAPKEHWAVGREQVNFNELKNERFIVREPGSATRLMFESWCSGQGITLGDTMQIESNEAI
RLSVASGLGLSVISAHTLQEGREKPAILTVTGFPLESNWYLVGRKDRRLPYAAMQLVDFM
AAHLVECIEPEWVATDISELAMHFNHAPQARS
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggataagcgttcgtcatcgactcagcttaaattgcggcatttgagttttcggttactg
caggtgtatgtgcaagtggtgcggttaggtaatatttccgcagcggcgagggcattgcat
ttaactcagcccacagtgtcattacagcttaaaaaattggccgatgtgttgggcgagcca
ttactcgagagtcgtgatggccgcattttaccgacattgattggtaatgagttgtaccgc
gcagcctgcgataccttgagtcgttttgaggatttcgatgcttttatgcagcaggctaaa
ggtggcagtgtcggtcacattaatatcggtattgtcactaccgcaaaatacgtgttacca
cggattttaggggcattttatcggcagtttccacaggttaaagtgaccttaaacattggt
aaccgtgcccatgtattaggcagatttgaacgtcaagaagatgatttatacctgttcagt
catcctccaagtggcgataacgtgttatctgcacgcatcattaaaaatccgctgcaactg
attgcaccaaaggagcattgggcagtgggtcgtgaacaagtgaattttaacgagcttaag
aatgagcgttttatcgtgcgcgaaccggggtcagccacccgcttaatgttcgagtcttgg
tgcagcggacaaggcatcacgctcggtgacactatgcaaatcgagagtaatgaggcgata
cgcttgagcgtcgcgtcgggcttaggtttgtcggtgatttcggcgcataccttgcaagaa
gggcgcgaaaaacctgcaattctaactgttacggggtttccgctcgaaagtaactggtat
ctagttggccgtaaagatcgccgtttgccctatgccgccatgcaactggtggactttatg
gcggcgcatttggtcgagtgtatcgagccagaatgggttgccactgatatcagtgaattg
gctatgcactttaatcatgcaccgcaagctcgatcctag
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