Shewanella oncorhynchi: RA178_05420
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Entry
RA178_05420 CDS
T09381
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sog03016
]
RA178_05420 (truB)
Enzymes [BR:
sog01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RA178_05420 (truB)
Transfer RNA biogenesis [BR:
sog03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RA178_05420 (truB)
Prokaryotic type
RA178_05420 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
WMB74056
UniProt:
A0AA50KGT8
LinkDB
All DBs
Position
1195920..1196885
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AA seq
321 aa
AA seq
DB search
MARRPKGRFIDGIVLLDKSTGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGE
GTKFSQHLLDADKRYLVTAKLGERTDTSDSDGEVVQTRAIDFTEAQLLTALDFFRGETQQ
VPSMYSALKYQGQPLYKYAREGIEVPRESRPITVFELNFIGLEGDELTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVIMLRRTQVAQYPYARMVTLEQLEALVAQAHEQQIDPSVLLDPLL
LPMDTAVADFPEVNVPDAIAPYLMQGQAVRVPVNADLKTDELVRITLGDIRRFVGIGTMN
EDGLLAPKRLIVIHDEPAETH
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcgtccaaaaggtcgttttatcgatgggatagtgctgctggataaatccact
ggcatgagttctaactttgcattgcaaagggtaaagcgcttttttaatgcgaataaagct
gggcatacgggcgcactcgatccgttagcgacaggtatgttacctgtatgcttaggcgaa
gggactaagttttctcagcatctattggatgccgataaacgctatttagtcactgcaaag
cttggcgaacggacagataccagtgattccgatggtgaagtggtgcaaacccgcgccatt
gattttaccgaggcgcagttattaaccgcgcttgatttcttccgtggtgaaactcagcaa
gtgccttctatgtattccgcgctgaaatatcagggtcagcccctgtataaatatgcccgt
gaaggcatagaagtgccgcgtgaatctcgccctattacggtatttgagctaaatttcatc
ggtcttgaaggcgatgagctgaccttagacattcattgttctaagggcacttatattcgc
actatcatagacgatctcggtgagatgctcggttgtggcgcccatgtgattatgctgcgc
cgcacccaagttgcgcagtatccctatgccagaatggtcactttagaacaacttgaagcg
ctagttgctcaagcacatgaacaacagatagatccgagcgtattactcgaccctctgtta
ttgcctatggacacggccgtggccgatttcccagaggtgaatgtgccggatgcgatagct
ccttacttaatgcaaggtcaagcagttcgggtaccggttaatgcagatttgaaaaccgat
gagttggtacgtatcactttaggtgacattcgccgatttgtggggattggcacaatgaac
gaagatggcttattagcgccgaaacgactcattgttatccatgacgaacctgcagaaacg
cattag
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