Shewanella oncorhynchi: RA178_05435
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Entry
RA178_05435 CDS
T09381
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA178_05435 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sog03019
]
RA178_05435 (pnp)
03016 Transfer RNA biogenesis [BR:
sog03016
]
RA178_05435 (pnp)
Enzymes [BR:
sog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RA178_05435 (pnp)
Messenger RNA biogenesis [BR:
sog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RA178_05435 (pnp)
Transfer RNA biogenesis [BR:
sog03016
]
Prokaryotic type
tRNA degradation factors
RA178_05435 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
WMB74059
UniProt:
A0AA50KFP8
LinkDB
All DBs
Position
1199745..1201844
Genome browser
AA seq
699 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKDADAGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYIDGEYVLNPSVAQLATSQLNLVVAG
TAGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPTWDWTAPTQDAD
LVAQIKELAEAGLGDAYKIQVKQDRYAQVSVVKAAAKEALLASNPSVDLREVDNLLGSLE
KKVVRGRIIRGEPRIDGREPDMIRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAAEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITVIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN
GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLELNQEVAVKVMEVDRQGRVRLSIKEAQTKEAAAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctattgtaaagagttttgagtatggtcaacatacagtcaccctggaaacaggt
gttatagcgcgtcaagctgatgcagccgttttagcgagtatgggtgacacgacagtgtta
gtcactgttgtcggtaaaaaagatgcagatgcaggccgtgactttttccctctgactgtt
aactatcaagaaaaaacctacgcagcgggtaaaattcctggtggtttctttaagcgtgaa
ggccgtccttcagaagatgagacattaatcgctcgtctgatcgaccgtccaattcgccct
cttttccctaatggtttcaaaaacgaagttcaagttatcattaccgtagtatctgtcgat
ccacaaatcgagccagatatcatctccatgatcggtacttctgcggcactggctatttct
ggtattccattcagcggtcctttaggtgctgcacgtgtgggttacattgatggcgaatac
gtgttgaacccaagtgttgcacaacttgcaaccagccaactgaacttagtggttgctggt
actgctggtgcagtattaatggtggaatcagaagcccaagcattaccagaagaagtgatg
ttaggttctgtagtttacggtcacgatcaacaacaagtggttatcaaggcgattgctgaa
tttaaagcagaagccggtaaaccaacttgggattggactgcaccaacgcaagatgccgat
ttagtcgcccaaatcaaagagcttgctgaagctggtttaggtgatgcgtataaaatccaa
gttaaacaagatcgttatgctcaagtttctgttgttaaagcagcagcaaaagaagccttg
ttagcgagcaatccaagcgttgatttacgtgaagttgacaacttactgggtagcttagag
aagaaagtggttcgtggtcgcatcatccgtggcgagccacgtattgatggtcgtgaacca
gacatgatccgtgccttaagtgtgttagcgggcgtattgccacgtactcacggtagcgca
ttgttcactcgtggcgaaactcaagcgttggtaacttgtactttaggtactgaacgtgat
gcacagaagatcgacagcatcatgggcgagcgcactaaccgtttcatgctgcactataac
ttccctccatactctgttggtgaaacaggcatggtgggatcacctaagcgccgcgaaatc
ggtcatggtaagttagcttggcgcggtattaacgctgttatgccttcagcggctgaattc
ccatacagcgtacgcgttgtatctgaaatcactgaatctaacggttcaagctctatggcg
tcagtatgtggtacttctctcgcgctgatggatgccggtgtacctatcaagacttctgta
gcgggtatcgctatgggtctagtgaaagaaggcgatgatttcgttgttctttctgacatt
ttaggtgatgaagatcatttaggtgacatggactttaaagttgctggtacgcgtgatggt
attactgcactgcagatggatatcaagatcgaaggtatcactaaagaaatcatggatatc
gcactgcaacaagcctatggtgcacgtgtacatattctaaacgtgatggatcaagcgatt
ggttcacaccgtgatgatatttctgatcacgctccacgtatcacagttatcaagatcaac
ccagaaaaaatccgtgacgttatcggtaaaggtggcgcagttatccgtgctctgaccgaa
gaaacgggcactacgattgaactggaagatgatggtactgtgaagatcgcttcttcaaac
ggcgaagcaactaaagaagctatccgtcgtatcgaagaaatcacatcagaagttgaagtg
ggtcgtatctacaatggtaaggttatccgtatcgttgatttcggcgcgttcgtgaacatt
ctgccgggcaaagacggtttagtacacatttcacaaatcagtgatgaacgtgttgctaac
gtgtctgatcaccttgagctgaaccaagaagttgccgttaaggtgatggaagtggatcgt
caaggccgcgtccgtctgtcaattaaagaagcacaaacgaaagaagctgctgctgaataa
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