KEGG   Shewanella oncorhynchi: RA178_05610
Entry
RA178_05610       CDS       T09381                                 
Name
(GenBank) CRISPR-associated endonuclease Cas3''
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
sog  Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:sog00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:sog02048]
    RA178_05610
Enzymes [BR:sog01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RA178_05610
Prokaryotic defense system [BR:sog02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    RA178_05610
SSDB
Motif
Pfam: Cas3_I-F_Cas2 Cas3-like_C_2 DEAD ResIII Cas3_HD PhoH HD AAA_30 AAA_25 HDOD AAA_19
Other DBs
NCBI-ProteinID: WMB74094
UniProt: A0AA50Q469
LinkDB
Position
1232735..1235671
AA seq 978 aa
MMVTFISQCEKNALKKTRRVLDAFANRIGDNTWQTLITEDGLLTVKKMLRQTASKSTAVS
CHWIRSRSRTQLLWVVGNRSKFNAQGIVPVNNTVKEVFMDVVTDKPKQGVLYANTQLQPL
SEHLFAVGFVAELLHRQLFPDNTQFSIANFIAGCLHDLGKIDPKFQEWVTNPKKRGLIAE
DGQHIDDAKFSFDKHPRHNEVSLLLYQLLDSAELKLLNPSNKRSVKHAVYWHHAKPFRKE
KNGFDTYKDISKKLVANQKEIGLSDIVAQAQTLLRQVIGIDKKYRELTNSLLEKAFLTEV
EQDLVANLPDAPALPSYKEYEFEESVLANSTNVKLNALNNIVRACLISADRTVSALSAAE
LHTAIFERQLDEIVTELFEVETTLSSDIDTCLNAFFPTSERSQKQRDIAKQLTTAEDVAV
LAGAAGCGKTKIALEWAKLQGAKRIIWVCPRVQVCQGLFYELTSEQYLPNSTIEINTGEF
KFHNQWDNPIPDDENFSGDIVITTIDQILGSVISHTKANTLIDFLNVHVVFDEFHEYVNM
PAFNLLFAELIAAKKMQKDQAKTLLVSATPHYVFVEDLLGIHPDDIKVMPSFNPSQYQLD
FKIFDDTNLSNINPLFAQQSGCTFVISNMALTAQNSFIKNQHNENAVLLHSKFIKSDKRK
WFGEVYEAYKRDGTRKYEVLRSGPIVQASLNISCDYMVAEITSAEDCLQRLGRLDRFGEN
SQVNTYTLAVPETIANGKGKGPAAGFLSKMYTLSSVRAWYQFLHSELVDNTFTLPEIYQL
YFTFHHTERNRGVIASDLVAALKNSVQQIKAKIVDPITASPKNNKDKKRTKISKGSLRGD
NRFVQLAVVDLSQAEPKYIEAYAYSIPVDDDSNIDNLTYAIKAICGYDQSDKDLLSHMFK
KHHNIMGGTGKAFTDKILLNEARDPESPIYLSYTTNDLLQVGGESARHPHAIYYAVCDKQ
AIGAMSIKQINQTTEDEE
NT seq 2937 nt   +upstreamnt  +downstreamnt
atgatggtgacttttatcagtcagtgcgagaaaaatgccctgaaaaagacccgccgcgtg
cttgatgctttcgccaatcgcataggtgataacacttggcaaactctgatcaccgaagat
gggctattaactgttaaaaaaatgctgcgccaaaccgccagtaaaagcaccgccgtgagt
tgccactggatccgctcacgttcaagaactcagctgttgtgggtggtgggtaacaggtcg
aaatttaatgcccagggcatagtgccggttaataatacagtgaaagaggtttttatggat
gttgtaacagacaaacccaagcaaggtgtgttgtatgccaacacccaactacagccgctg
agtgagcatttatttgcggtcggctttgtagccgagctactgcaccgtcagttatttcca
gacaatacacagttttcaattgcgaattttattgcaggttgtttgcatgacttaggaaaa
attgaccccaagtttcaagagtgggtgactaatcccaaaaagaggggcttaattgccgaa
gatggacaacacattgatgatgctaaatttagctttgataaacatccaaggcataatgaa
gtgtcactgctactctatcaattgcttgatagtgcagaacttaaattactaaacccaagt
aataaacgctcagtaaagcatgcggtgtactggcatcatgctaagccatttcgtaaagaa
aagaatggttttgatacctataaagacatcagcaaaaagctagtggcaaatcaaaaagag
ataggtctatctgatattgtcgctcaagctcaaacactgcttaggcaggttatcggaatc
gataaaaagtatcgtgagttaacgaatagccttcttgaaaaagccttcttaactgaagtt
gaacaagatctagtggcgaatctgcccgatgcaccagccttacccagttacaaagaatat
gaatttgaagagtcggtattggccaatagcaccaatgttaaactcaatgcgctaaacaac
atagtacgtgcttgtttgatctcagctgatcgtactgtatcggcattgagcgcggcagag
ttacatactgccatttttgagcgccagttagatgaaatagttaccgagctatttgaagtg
gaaacgacacttagttctgatattgacacttgcctaaacgccttttttcctacgagtgag
cgcagtcaaaaacaaagggatattgccaagcagctaaccaccgccgaagatgtcgctgtg
ctcgcgggggctgcaggctgtggtaaaaccaaaatcgccttagagtgggccaaattgcag
ggggcaaaacggattatttgggtttgccctcgcgtacaagtctgccaaggattattttat
gagctgacctcagagcaataccttcccaatagcaccattgaaattaatacaggtgaattt
aaattccacaatcaatgggataaccctattcctgatgatgaaaacttttccggtgatata
gtgatcaccaccatagaccaaattcttggctcagtgatcagtcacacgaaagctaatacg
cttattgattttttaaatgtgcatgtagtgtttgatgagttccatgaatacgtcaacatg
ccagcttttaatttgctgtttgctgaactcatagcagcaaaaaaaatgcaaaaagatcaa
gctaagaccttattagtgtcggcaacacctcattatgtctttgtagaagatttactcggt
attcaccctgacgatattaaagtcatgccatcatttaacccaagccagtatcaactcgat
tttaaaatctttgatgatactaatctaagcaatataaacccgctatttgcacaacagagt
ggctgtacttttgttatcagtaacatggcgctgacggcgcaaaacagttttattaaaaat
cagcacaacgagaatgcggtgttattgcattccaaatttattaaaagtgataaacgtaaa
tggtttggtgaagtgtacgaggcttacaagcgcgatggcactcgcaaatatgaagtgcta
cgcagtggtccgattgtacaagcgtcgcttaatatcagttgtgattatatggtggccgaa
atcaccagtgctgaagattgtttacagcgtttgggtcgtttagatcgttttggtgaaaat
agtcaggtgaatacctataccttagctgtgcctgaaacaatcgccaatggcaaaggtaag
gggccagcagcgggctttctatcaaaaatgtatacattgagttctgttcgggcttggtat
cagtttttacatagtgaattggtagacaatacctttactttgccagagatttatcaactt
tatttcacctttcatcacaccgagcgtaatcggggggttattgcaagtgacttagtggcc
gccctcaaaaatagtgtgcaacaaatcaaagcgaaaattgttgatcccattactgcttca
ccaaagaacaacaaagataaaaaacgcaccaagatcagcaaaggatcactgcgcggtgat
aatcgctttgtacaattagctgtggtggatttaagtcaagctgagccgaaatatattgaa
gcctacgcttattcgattccagtggatgatgacagtaatatcgacaatctcacatacgcc
atcaaagctatttgtggttatgatcaaagcgataaagatttactatcccacatgtttaaa
aaacatcacaacattatgggcggcacgggtaaggcgttcactgataagattttactcaac
gaagcacgcgacccagagtcaccgatttatttgagttataccactaatgatttactgcaa
gtgggtggcgaaagtgctcgtcatcctcatgccatttattacgccgtgtgcgacaaacaa
gccatcggtgctatgtccattaaacaaattaatcaaaccactgaagatgaggaataa

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