Shewanella oncorhynchi: RA178_06395
Help
Entry
RA178_06395 CDS
T09381
Symbol
lptF
Name
(GenBank) LPS export ABC transporter permease LptF
KO
K07091
lipopolysaccharide export system permease protein
Organism
sog
Shewanella oncorhynchi
Pathway
sog02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
RA178_06395 (lptF)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sog02000
]
RA178_06395 (lptF)
Transporters [BR:
sog02000
]
ABC transporters, prokaryotic type
ABC-2 type and other transporters
Lipopolysaccharide transporter
RA178_06395 (lptF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LptF_LptG
LMBR1
Motif
Other DBs
NCBI-ProteinID:
WMB74240
UniProt:
A0AA50KFQ6
LinkDB
All DBs
Position
1419440..1420552
Genome browser
AA seq
370 aa
AA seq
DB search
MIVFKYLIREVLKAQIAVLLVLLTIFISQHFVRILADASDGDFPASLIMTLIGLNLPYLV
ILVLPLSLFLGILLAHGRMYSENEMVILHGVGVSEWYVTRVTLILAVINMLFTGYLSLYV
APWAEEQQNQVLEKAQSEAGLAALIQGRFQASPNGRAVLFVERIGKDNELDKVFVAQLPD
PDDETGVTNVVVAKGGRVQEDSSGAQQLNLNDGVRYQGSPKAKDYQMIEFGGYKMQIKEQ
QVDERRRKLSALPVDELVKIEGAEAAAEFHWRLAIPLAIPIMTLIAVPLARVNVRQGKFA
KMFPAVLLYLGYFGLMVAGRKALQDGIIPLYLGMWWIHVSALLMGLFLLGKDRPIFSRIS
SLFAYKKVAA
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
gtgattgtatttaaataccttattcgagaagttttaaaggcacaaattgcggtactttta
gtgctgttaactatttttattagccagcatttcgtgcgtatactggccgatgcctccgac
ggcgattttcccgcctctttaatcatgactctgattgggcttaacttgccttatctggtg
atcttagtgctgccgttaagtttgttcttgggtattttactggcccacggccgtatgtat
tccgaaaatgaaatggtcattctccacggtgttggggtcagtgagtggtatgtcacccgc
gtaacgctgatcctcgccgtgatcaatatgctgtttactggctatttatccctttatgtt
gctccttgggcagaagaacagcaaaaccaagtgctcgaaaaagcccagtctgaagcgggt
cttgccgccttaatccaagggcgttttcaggcgagtcccaatggtcgcgcggtattattt
gttgagcgtattggtaaagataacgagttagataaagtgtttgtagcccagttgccagat
cctgatgatgaaactggcgtgaccaatgtcgtggtggctaaaggtggacgagtacaggaa
gatagttcaggtgctcaacaattgaacttgaatgacggcgtgcgttatcaaggcagcccg
aaggcgaaggactaccaaatgatcgaatttggtggttataaaatgcaaattaaagagcag
caagttgatgagcgtcgccgtaagttatctgcattgcccgttgatgaactcgtgaaaatt
gaaggtgctgaagccgctgctgaattccactggcgtcttgctatcccgctcgcgattcca
attatgacactaattgctgtgccgttggcgcgggtgaatgtgcgccaaggtaagtttgct
aagatgttcccagcagtacttttatatcttggctattttgggctaatggtcgcgggacgt
aaggcattgcaagatgggattattccactgtatttaggtatgtggtggatccatgtttct
gcgctcttgatggggttattcttgctcggcaaagataggcctattttcagtcgtatatcg
tccttgtttgcctataagaaggtggcagcatga
DBGET
integrated database retrieval system
