Shewanella oncorhynchi: RA178_06485
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Entry
RA178_06485 CDS
T09381
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA178_06485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sog03019
]
RA178_06485
Enzymes [BR:
sog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RA178_06485
Messenger RNA biogenesis [BR:
sog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RA178_06485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
P-loop_SecA
AAA_19
AAA_22
AroM
Gag_p24
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WMB74257
UniProt:
A0AA50Q6W5
LinkDB
All DBs
Position
complement(1438274..1439575)
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AA seq
433 aa
AA seq
DB search
MRFESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMVEKPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQK
LKRGADVIVATPGRLLEHLTACNLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKR
QNLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLVA
TEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQQIRRVTVPGYEVGSRELLLKQLQTRRSFAKKQQRTDNVGAQVAAEKNMQGRRVKM
KVGQAPSKAKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagtttttcccccgagattttgcgcgctatctcagattgcggt
tatcaacaaatgacgcctattcagcagcaagcgatacctgctatccgccgcggccaagat
gtcttagccagtgcccaaaccggtacgggtaaaaccgccgctttcgcgctgccgatcctg
caaaagatggttgaaaagccaagcgaaacgctaaagtcgaatgcccgcgtattgatcctt
acgccgacccgtgagcttgcagctcaagtggctgacaacgttacggcttactgcaaatac
ttaaacttcagtgtcttaaccatttacggcggcgtaaagattgagactcaagcgcaaaag
ctgaaacgcggcgccgatgtgattgttgccacccctggtcgcttacttgaacaccttacc
gcctgtaacttaagcctgtcgaacgtcgactttttagtgctagacgaagctgatcgaatg
ctcgacatgggctttagcgccgatatccaaaaaatccttcaagcggtaaataagaagcgt
caaaacctgttgttctcggccactttctcaagtgcggtgaaaaaactcgccaacgacatg
atggttaaaccgcaagtgatcagcgttgataaacaaaacactacagccgacaccgtcagc
caagtagtttatccggttgaacaacgccgtaaacgcgaactgctttctgagcttatcggc
aagaaaaactggcaacaggtattggtatttactgcgacccgtgaagccgccgatacgcta
gtcaaagaattaaacttagatggtatcccatctgaagtggtccacggtgaaaaaggccaa
ggcagtcgtcgccgcgccctgcgtgagtttgtggcgggtgatgtgcgcgtactggttgcc
accgaagttgccgcccgtggtctagacatcccaagccttgaatacgtagtcaactatgac
ttacctttcctcgcagaagactatgtacaccgtatcggtcgtacaggccgtgcgggtaaa
acaggcgtagccatttcatttgtgagccgcgaagaagagcgcaccttagccgatatcgaa
aaattgattggccaacagattcgccgcgtcactgtgccaggttatgaagttggcagccgc
gaattgctattaaagcaattgcaaacccgccgtagctttgccaagaagcaacaaagaacc
gacaacgtcggcgctcaagttgctgctgagaaaaacatgcagggccgccgcgtaaaaatg
aaagttggtcaagcaccgagcaaggcaaaaaaacttaagtaa
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