Shewanella oncorhynchi: RA178_06660
Help
Entry
RA178_06660 CDS
T09381
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_06660 (phrB)
Enzymes [BR:
sog01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
RA178_06660 (phrB)
DNA repair and recombination proteins [BR:
sog03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
RA178_06660 (phrB)
Prokaryotic type
RA178_06660 (phrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
WMB74289
UniProt:
A0AA50Q4C2
LinkDB
All DBs
Position
1477583..1479085
Genome browser
AA seq
500 aa
AA seq
DB search
MTLANDSMQIDSIPIKVQGNNALMWFRQDLRLADNQALTAACDWARENGVALKAIYIATP
TQWQRHDVASIQLDFIERHINLLAQGLASLGIGFELIQLDTFADVPEFIGHYCQQQGIGR
VFAGREPEINEQLRDQACIQAGIPLVLTEEHCLLKPGTVLNLSGDMYKVFTPFSRKWREI
AARHAILPLPVPAPLGPVLAEPKPLLFNNVTKVSSELWAAGEGQAKRLLSAFIQQKVQDY
KQDRDFPAIDGTSSISPYLAIGVVSPRQCVAALLHHFPEVIVDDTSPARTWLNELTWREF
YRHLLVAFPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIVDAAMRQLNQTGWMH
NRLRMVVASFLTKHLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFN
PISQSEKFDPDGSFIRKYLPELASWGIKQLHQPSTAQTPSLFEQPLFNTKMAYPSAIVEH
SAARARALTVLGVLKKAAAQ
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgacattagctaacgattcaatgcaaatagattcaattccaataaaagtgcagggcaat
aatgcactgatgtggtttcgccaagatttacgccttgccgataatcaggcattaaccgcc
gcttgcgattgggcgcgggagaatggcgtggcacttaaggccatttacattgctacgcca
acccagtggcagcgccatgacgttgcatcaattcagttggattttatcgaacgtcatatc
aatctacttgcccaagggctggcgagtcttggtattggattcgagttaattcagttagat
acctttgctgatgtacctgagtttatcggtcactattgccagcaacaggggattggtcga
gtgtttgctggtcgcgagcctgagattaacgagcaactgcgagaccaagcctgtattcag
gcgggtattcctctagtgttaaccgaagaacactgtttgcttaagccgggcactgtgctg
aatttatccggcgacatgtacaaggttttcactccttttagccgtaagtggcgagaaatt
gccgcccgccatgccattttgccgcttcctgttccggcgccacttgggcctgtgttggcc
gagccaaagccgcttttgtttaacaatgtcactaaagtgtcgagtgaactttgggctgcg
ggagaagggcaggcgaagcgtttgctctcggcatttattcagcagaaagtgcaggattat
aagcaagatagggatttccccgccattgatggtactagctcaatttcaccctatctggcc
attggtgtggttagcccaagacaatgcgttgccgcgctgttgcatcacttccctgaggtg
attgtcgacgacactagccctgctcgtacttggttaaatgagcttacttggcgtgagttt
taccgtcatttgctggtggcatttcccgatttatctaagaatcacaatttcaatcgtcaa
gccgaccatgtgcagtggcgcaataacccgcaggagtttgctgcttggtgtgaaggtcgt
actggctatccgattgtggatgcggctatgcgccaactcaatcaaacgggttggatgcac
aatcggctgcgtatggtggtggcgagtttcctgactaaacatctgctgattgactggcgc
tggggcgagcgctatttccgccaaaaactgattgatggtgacttagccgcgaataatggc
ggctggcagtggtctgcgggttgtggctgcgatgctcaaccttatttccgtatttttaat
cctataagccagagtgaaaagtttgatccagatggcagctttatccgtaagtatttacca
gagctcgcatcttggggaattaagcaattacatcaacccagtacagcgcagacaccgtcc
ttgtttgaacagccgttattcaacactaaaatggcttatccaagtgcgattgtcgagcac
agtgcagcaagagcaagggcattaaccgtattaggcgtattgaaaaaggccgcggcccaa
taa
DBGET
integrated database retrieval system
