Shewanella oncorhynchi: RA178_07010
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Entry
RA178_07010 CDS
T09381
Symbol
bamB
Name
(GenBank) outer membrane protein assembly factor BamB
KO
K17713
outer membrane protein assembly factor BamB
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sog02000
]
RA178_07010 (bamB)
Transporters [BR:
sog02000
]
Other transporters
Pores ion channels [TC:
1
]
RA178_07010 (bamB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PQQ_2
Beta-prop_ACSF4
PQQ
Beta-prop_EMC1_N
Beta-prop_WDR36-Utp21_1st
DUF6906
Beta-prop_LRRK2
Motif
Other DBs
NCBI-ProteinID:
WMB74353
UniProt:
A0AA50KFS7
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All DBs
Position
1537720..1538907
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AA seq
395 aa
AA seq
DB search
MKSWCKNLLAAGLSLAMLSACSSSDVEEEPVSELTAIQATVFPEVSWSASVGNGVGDYYS
RLAPAVSYGKIFAADRYGEVVAFDEATGERVWTKDFSEEFRDNALAKNKGARIAAGVTAA
RNKVFLGGESGLLAALNAEDGQVLWHVVAGGELLSAPTVADDVVVVSTSSGSLEAFNVDT
GAKLWVYEMQLPNLTLRGTGSAAYEAGGFFIGTADGKVAVVIKNNGQAAWEQAIYNPTGG
NEFTRMADVDMTPLILGDNLYAVSYNGNLVSMELRTGRVVWTRKYSSFNELASAGLSLYL
VDDHSRIYSVDKRNGLELWSNSELANRTLTSPAVYKDYLVVGDFEGYLHFIDRSTGTIVG
RVQVDSSGLYSQPLVVDDKIYVQGRSGKLAVVTLP
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcttggtgcaaaaacctgctagccgctggattaagtctggccatgttatccgcc
tgttcgtcgagcgatgtcgaagaagaaccggtaagtgagttaactgccattcaggcgaca
gtgtttcctgaagtgagttggagcgcctctgtcggtaatggtgttggtgattattattct
cgcctcgcccccgccgttagttacggaaaaatttttgccgccgaccgttatggtgaagtg
gttgccttcgatgaggccactggcgagcgcgtttggactaaagatttcagcgaagagttt
cgtgataacgctttagcgaaaaataaaggtgcgcgtattgctgctggtgtgactgctgcg
cgtaataaagtctttttaggtggcgaaagtgggctgcttgctgcattgaacgctgaagat
ggtcaagtgttatggcatgtcgttgctggcggtgaattactgtctgctcccactgtggcc
gatgacgtcgtggtggtcagtaccagttctggttcactcgaagcgtttaacgtcgatact
ggcgctaagctgtgggtgtatgaaatgcaattgccgaatctgaccctgcgcggtacaggt
tctgcagcttacgaagcgggtggtttcttcataggtaccgccgatggcaaagtggctgtt
gtgattaaaaacaatggtcaagctgcgtgggaacaggcgatttacaatccaacgggtggt
aacgagtttacgcgtatggccgacgtggatatgacgcccttgatccttggcgacaactta
tatgcagtgagctacaacggtaacttagtgtcgatggaactgcgcacgggtcgagttgtg
tggacacgtaagtattctagctttaacgagttagcatcagcgggcctaagcttgtactta
gttgacgatcacagccgtatctactcagttgataaacgtaacggtttggaactgtggagt
aattctgagttagctaaccgcactctgacatctccggctgtatataaagactatttagtt
gtgggtgatttcgaaggttatttacacttcatcgatcgcagtacagggacgattgtgggt
cgtgtccaagtggacagctcaggattatacagccagccgttagtggtggatgataaaatc
tatgttcaaggtcgcagcggaaagttggctgttgtaacacttccatag
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