KEGG   Shewanella oncorhynchi: RA178_07875
Entry
RA178_07875       CDS       T09381                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
sog  Shewanella oncorhynchi
Pathway
sog02020  Two-component system
Brite
KEGG Orthology (KO) [BR:sog00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    RA178_07875
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:sog02022]
    RA178_07875
Two-component system [BR:sog02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   RA178_07875
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_2 AAA_7 AAA_3 HTH_50 AAA AAA_16 FleQ HTH_28 ATPase Torsin
Other DBs
NCBI-ProteinID: WMB74520
UniProt: A0AA50KFJ8
LinkDB
Position
complement(1739923..1741302)
AA seq 459 aa
MSVPNSIQDYSVLIIDDEPHIGTVLVQLFELEGIKALATTEPKGIAKLLHKDWAGMVISD
VNMPQLDGISLMQQIRLQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHILDV
VKRALEKRSLTLENRKLKKDLESQSVPGPRILGNSVGINRMRHIITQVIDTPADVLIEGE
TGTGKELVARYLHDHSSRSQANFVAINCGAIPENLIESELFGAEAGAFTGVDKMRIGKFE
YANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSISLDIRVIAATKVDLKSLCD
TGEFRQDLLYRLNLVTVPIPPLRDRREDIPLLFLHFARVASARYHKALIALNAEQNAILT
SHDWPGNVRELRNLAERFVLLGGEAAFAGTLGNTPSLHSSMSLLQRVEFFERVLIEEALS
HNKGSIKQTMEQLELPRKTLYDKMRKYDLDRKQYINSDD
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgagtgtgcccaattcaattcaagattattctgttctcatcatcgacgatgagccgcac
ataggcacagttctcgttcaactatttgaactggagggcattaaggcgctcgccaccaca
gaacccaaaggtatcgctaagttgctgcataaagattgggcgggaatggtgatatcggat
gtcaacatgccacaattagacggcatcagcttaatgcaacaaatccgtctgcaagatccc
gatctccccgttgtcctactcactggttttggtgatattgccatggcagtcaatgcctta
aaacaaggcgcctacgactttctcgaaaaaccctttaataacgaacatatactcgatgtg
gttaaacgcgccttagaaaaacgcagtctaaccttagagaaccgcaagcttaaaaaggat
ctcgaaagccaaagcgtaccgggccctcgtattttgggcaacagtgtcggcatcaaccgt
atgcgccacatcataacccaagtgatagatacgcctgcggatgtgttaattgaaggcgaa
accggtacaggtaaagaacttgttgcccgctatttacacgaccacagcagccgcagccaa
gccaactttgtcgccatcaactgtggtgcaatccccgaaaacttaattgaaagtgaactc
tttggcgccgaagcgggggcctttactggcgtcgataagatgcgcattggcaaatttgaa
tatgccaatggtggcacgttatttttagatgaaattgagagtacgccactgtcgctgcaa
gtaaaactgctgcgggtacttgaagaccgtaaggttgaacgcttagggtcaaacaaaagc
atcagccttgatatacgggtaatcgccgccactaaagtagatttaaagagcttgtgtgac
accggggaatttcgccaagacttgttgtatcgcttaaatctggtgactgtgcccatccct
cccctgagagatcgccgtgaagatattccgttactctttttacactttgcccgcgtcgca
tcggcacgctatcacaaagcgcttattgccttaaatgcggagcaaaacgcgatactgact
tcccacgactggccaggcaatgtgcgtgagttacgtaatctcgccgaacgctttgtgctg
ctgggcggagaagccgcctttgctggcacgttaggcaatactccaagcctgcactcgagt
atgtccctgctacaaagggtagagttttttgaacgggtactgattgaagaagcacttagc
cacaacaagggcagtattaagcagaccatggagcagctagaactgccccgaaaaaccctc
tacgacaaaatgcgtaaatacgatttagaccgcaaacagtacattaattccgatgactaa

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