Shewanella oncorhynchi: RA178_09050
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Entry
RA178_09050 CDS
T09381
Symbol
dnaX
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03030
DNA replication
sog03430
Mismatch repair
sog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RA178_09050 (dnaX)
03430 Mismatch repair
RA178_09050 (dnaX)
03440 Homologous recombination
RA178_09050 (dnaX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sog03032
]
RA178_09050 (dnaX)
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_09050 (dnaX)
Enzymes [BR:
sog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RA178_09050 (dnaX)
DNA replication proteins [BR:
sog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RA178_09050 (dnaX)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RA178_09050 (dnaX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNA_pol3_gamma3
DNA_pol3_tau_5
DNAX_ATPase_lid
AAA
AAA_22
RuvB_N
AAA_5
AAA_16
PIF1
AAA_14
ResIII
TsaE
AAA_18
AAA_2
Adeno_E1B_55K_N
AAA_assoc_2
Motif
Other DBs
NCBI-ProteinID:
WMB74732
UniProt:
A0AA50KHK1
LinkDB
All DBs
Position
2011455..2014748
Genome browser
AA seq
1097 aa
AA seq
DB search
MSNHGMLSFKVLGAHAPAFVSHTLGSSMSYQVLARKWRPATFDQMVGQSHVLHALTNALS
QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCGSCVEIAQGRFVDLIEV
DAASRTKVDDTRELLDNVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL
LATTDPQKLPVTVLSRCLQFNLKSLTQAEIGTQLNHILTQEQFPFDVEALKLLAKAANGS
MRDALSLTDQAIAFGGGNVMLGQVQTMLGSIDEQHVVALLNALTDADIGVLMHTCAQVLA
YGADAQEVLRSLLELLHQITLTQFAPACAQQSLYSAQIRAFAEQLKPEQVQLYYQILLTG
RKDLPHAPDPKSGLEMALLRAVAFVPEKPVKRWQPDAVAEISLSEGQTPVATAQAHDVKE
QQFAEPHTAEQLPAEKKTALIEPADTTEQALDAELQADAALIAEQAVILSQAQSQGFNAG
SLNVEIVNAEVEPQTQTVSTVQASLIHTSESVTGIEASVVSIDTHNIQGIELVTTASELS
LVNTAEPETAVNSTAVECGDSVDKALSDKDPAAENIFDNNTFELGHDANSLDGNEAEHSY
PAIGDYALESAPLDSYQDVYADFSSGAYNDDNFNHGFDSQEAINSVDVQSSVGVSNAAGM
QASADRQLAPVAQVFTQSQTSVSDSIQEQALQQAASVSLADDDILSAVLAARDSLLSDLD
ALSAKDGDEKKSSLDSKLKTPNTKSHGVTLPKSVTKIEASQPSVAFSVDPASDLDPDLAI
DFDDDFDLDLEPIDLHQAVSSVVISTGIVSEKPVKPSTADDRPPWEAAPESESIEVTQVD
SNKTDSVQPVSAQATDINNVQTSHAQELLGESYTPNHAQDDTLSLSDGQVAASSLKSEIL
QNQAVRQEEIPASEFALASTTALTNASNTVEHTQETQVALSSTQPISGHPLDLHWYKLMA
SLEIGGRVRQLAVNSVCQTLSDPLPLLLKPNQKHLAADVAIVQLEQALTTALGNPRRVQV
VIGIDEQRETPLELRKRFHQELLQQAHQSLIHDDNVQWLIQRMGAELDADSLVYPPELLN
LRSQQIQALPELTEAAS
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcatggcatgttatctttcaaagttctcggggcgcatgctcccgcttttgta
tcacatactctggggagttccatgtcatatcaggtgttagccagaaaatggcgccctgcc
acatttgatcaaatggttggccaaagccatgttttgcatgccttgaccaatgcgttaagc
cagcagcgcttacaccatgcttacctgtttacgggaacgcgcggtgtcggtaaaaccagc
ttggcgcgactctttgccaaaggcttaaattgcgaacaaggcgtgacagccactccctgt
ggtgtttgcggcagttgtgtggaaatcgcccaaggccgttttgtcgatttgattgaagtc
gatgccgcatctcgcactaaggtcgatgatacccgtgagctgttagacaatgtgcagtat
cgtccaacccgtggccgctttaaggtttatctcatcgacgaagtgcatatgctgtcgcgc
agcagttttaacgcactgctaaaaaccttagaagaaccccccgagcacgttaaatttctt
ctggcgaccaccgatccgcagaaactgccagtgactgtgttatctcgttgtttgcagttc
aatttaaaaagcctgacccaagctgaaattggcactcagctcaatcatatcttgacccaa
gagcagtttccctttgatgtagaagccctaaaattgctggctaaagctgccaatggcagt
atgcgtgatgccttgagtttgacagatcaagccatcgcctttggtggcggtaatgtgatg
cttggccaagtgcaaaccatgcttggcagtattgatgagcagcatgtagttgccttgctt
aatgccttaaccgatgccgatattggtgtgttaatgcatacctgtgcccaagtgcttgcg
tacggcgcagatgcccaagaagtgctacgcagtttacttgagttgttacatcaaattacc
ttgacccaatttgcccccgcgtgcgcgcagcaatccttgtatagcgcacagattcgcgcc
tttgccgaacagcttaagccggaacaggtgcagctttattatcagattttattaacaggc
cgcaaagacttaccccatgcaccggatcctaaatcgggtcttgagatggcgctattacgc
gctgtggcgtttgtgccggaaaagccagtaaagcgctggcagcctgatgcggtcgctgag
atcagtttatccgaagggcaaacgccagttgcgacagcgcaagctcatgatgtaaaagaa
caacagtttgctgagccacatactgcggaacaactgcctgctgaaaaaaaaacagcatta
attgagcctgccgataccacagagcaggcacttgatgctgagctccaagcggatgcggca
ttaattgccgaacaggcggtgattctaagtcaggcgcagagtcagggatttaacgctggc
agcttaaacgttgagatagtgaatgctgaggtcgagccacaaactcaaacagtatcaacc
gttcaagcgtctcttatacacacttcagaatccgttactggtatcgaggcatcggttgtt
agtattgatactcataatattcaaggaattgaattagtcacaacagcttccgagctgagt
ctagtgaatacggcagagcctgaaactgctgtcaattcaacagctgttgagtgtggtgac
agtgtagataaagctctttctgataaagaccctgctgcagagaacatcttcgataacaac
acttttgagctagggcatgatgccaatagtcttgatggaaatgaagctgagcattcatat
ccagcgataggggattatgccctagagtcagctccgcttgattcctatcaagacgtttat
gctgatttctcctctggcgcttataatgatgataactttaaccatggctttgattcgcaa
gaggctataaattctgttgatgttcaaagttctgtaggtgtttcaaacgctgcaggcatg
caagcttctgctgatcgtcagttagcacctgtggctcaagtcttcactcaatcacagacc
tcagtatcagattcaatacaagagcaagcgctacaacaagccgcttctgtatccttagcc
gatgatgatattctctcggcggtgttggcggctcgggattcactgctatcggatcttgac
gccttaagtgctaaggacggtgatgaaaaaaagtcgtcattggactcaaaacttaagacg
ccaaacactaaatcacatggtgtaaccttacctaaatcggttactaaaattgaagcgagt
cagccaagtgtggcattttctgttgatccagcatctgatttagaccctgatttagcgata
gattttgatgatgacttcgacttagatcttgagcctatcgatctgcaccaagcagtatct
tcagtcgtcatttcaactggaattgtctctgagaagcctgtcaaaccgtcaactgcagat
gatcgtccgccttgggaggcagcgcctgaatctgaatctatcgaagtgacgcaagtcgat
agcaataagactgacagtgttcagcctgtgagcgcgcaagctactgatataaataatgtt
caaaccagtcatgctcaagagcttttaggcgagagttacacacctaatcatgcacaagat
gacactctatccctgagtgacgggcaggtcgcagcatcaagtttgaagtcggaaatactt
caaaatcaggctgtacgtcaagaagaaatacccgcctcagagtttgctttggctagcaca
acagcactgacaaatgcgtcaaatacagtggaacacacgcaggagacacaagtcgcgctc
agttcgactcaacctattagcggtcatccattagatttacattggtacaagttgatggcg
agcttagagatcggcgggcgagtgcggcaactggcggttaattctgtctgccaaaccttg
agcgatcctttgccgttgctgcttaaaccaaaccagaagcatttagcggccgatgttgcc
atagtgcagcttgagcaagccttaactaccgcgctcgggaacccaagacgggtacaagtg
gtcataggaatcgatgaacagcgggaaacgcccttagagttacgtaagcgtttccaccaa
gagttgctgcaacaagcgcatcaatcattgattcatgatgacaatgtgcaatggttgatc
caacgtatgggcgccgaactcgatgccgatagtctagtatatccgccagagttgttgaat
ttacgcagtcagcaaatacaagcgttacctgagttaactgaggctgcgagttag
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