Shewanella oncorhynchi: RA178_10050
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Entry
RA178_10050 CDS
T09381
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sog03032
]
RA178_10050 (topA)
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_10050 (topA)
Enzymes [BR:
sog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RA178_10050 (topA)
DNA replication proteins [BR:
sog03032
]
Prokaryotic type
DNA Topoisomerases
RA178_10050 (topA)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RA178_10050 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
DUF4355
Motif
Other DBs
NCBI-ProteinID:
WMB74913
UniProt:
A0AA50KHE2
LinkDB
All DBs
Position
2205976..2208618
Genome browser
AA seq
880 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSTSEGNEKVKSAAEVKKMSP
EEKAQYKKVKDQQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSADQIYLATDL
DREGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQDAFSKPSTLDTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAELNTPAQE
ALRMEVVKHLDAAFNPINEQQAMAAVQALSAASFTVLAREDKATQSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEAVENLRDMIAKEFGDKYLPAEP
IRYGSKEGAQEAHEAIRPSNVQVQAATLSDMERDAQRLYELIWRQFVSCQMTPAQYDATK
LTVKAGDYELKATGRTLRFDGWTRVQTALKKKNEEDNTLPFVAQGDVLALKELQPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSERLV
SSFADLMSYDFTASMEQTLDDVARGELDWKKVLDGFYADFTKQLEKAELDPEEGGMRLNQ
MVMTDIKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGVEAISENSEDAE
TDALRAKHRCSICGTAMDSYLIDEKRKLHVCGNNPICEGYEVEEGQFKIKGYEGPLIECD
RCGHDMELKNGRFGKYFGCTNEECKNTRKLLKNGEAAPPKEDPIYLPELKCSKSDAHFVL
RDGAAGIFLAASTFPKSRETRAPLVEELVQYRDLLWPKYQYLADAPVTDDEGNKAAVKFS
RKTKEQYVATEVDGKATGWSAHYVNGKWVSESTKKAKKGA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcaccggccaaagctaagactattaataaatat
cttggcaaagaattcatcgttaaatcgagcgtaggtcacatccgtgatctgccgacatca
tcgacttcagaaggcaatgaaaaggttaaatccgctgccgaagttaagaagatgtcgcca
gaagaaaaagctcaatataaaaaggtgaaagatcagcaagcgctagtgtctcgtatgggc
gtaaaccctgaaaagggctgggcggctaagtaccaaattttgccgggtaaagaaaaagtc
gttaaagagttacaggcacttgccgattctgctgaccaaatctatctcgcaaccgactta
gaccgtgagggagaagctatcgcctggcatttgcaagaggtgattggtggtgatccttca
cggtatcaacgtgttgttttcaacgaaattactaagtctgcgattcaagatgcttttagt
aaaccgtcgacactcgacactaacatggttaatgcccaacaagcgcgccgcttcttagac
agagttgtcggttttatggtgtcgcctctgctgtggaaaaaagtcgctcgtggtttatcc
gctgggcgagtgcagtcggttgccgtgcgtttagtggtcgaacgcgaaagcgaaatcaaa
gcctttgtgcctgaagaattttgggatgtacacgcagagctcaatacgcccgctcaagaa
gctttgcggatggaagtggttaagcatctagatgctgcctttaatcctatcaatgaacag
caagcgatggctgcggttcaagcgttatctgcggcaagttttactgtgctggcccgcgaa
gataaagcgactcaaagtaaaccatcggctccttttattacgtcgacactgcaacaggcc
gcgagtacacgtttaggttttggtgtgaagaagaccatgatgatggcgcagcgactttac
gaagccggtcatatcacttatatgcgtaccgactcgaccaatttgagtcaagaagccgtt
gaaaacttgcgcgatatgattgccaaagaatttggtgataagtatctacccgccgaaccg
attcgatacggatcgaaagaaggcgcacaagaggctcacgaagcgattcgtccatcaaac
gttcaagtgcaagcagcgaccttatctgacatggaacgtgacgctcagcgcttatatgag
cttatttggcgccagtttgtctcatgtcaaatgacacctgcacaatatgatgccactaag
ttgaccgtaaaagcgggtgattatgagctcaaagctacgggacgtaccttacgtttcgat
ggttggactcgcgtacaaacagcgcttaagaagaaaaacgaagaagacaatacgttacca
ttcgtggctcagggcgatgtattagcattaaaagaattgcagcctaaacaacattttact
aagccgccagcacgatacagcgaagcttctttagtaaaagaattagaaaaacgcggtatt
ggccgcccatcaacctacgcaaccatcatttcaacgattcaagatcgtggttatgtaaaa
gtcgaaaatcgtcgtttctatgccgaaaaaatgggtgaaattgtcagcgaacgattggtg
agcagttttgctgatttgatgagctatgactttaccgccagcatggagcaaacattagat
gatgtggctcggggcgagttagactggaaaaaagtactcgatggtttctatgctgacttt
actaagcaattagaaaaagcggaactagatcccgaagaaggtggcatgcgtcttaaccaa
atggtgatgacggatatcaagtgcccaacttgtggtcgtcctatggggatccgcactgga
acgactggggttttccttggttgctctggttatgaattgccccctaaagaacgctgtaag
acgacgatgaacctcacgcctggcgttgaggcgattagcgaaaacagtgaagatgccgaa
acagatgcactgcgtgcgaagcaccgttgtagtatttgtggcacggcaatggacagttac
ctgatcgatgagaagcgtaagttacacgtctgcggtaacaatccaatctgtgaaggctat
gaagtcgaagaaggccaattcaagatcaaaggctatgaaggtccactgattgagtgtgat
cgctgtggtcacgatatggaactgaaaaatggtcgttttggtaagtatttcggttgtact
aacgaggaatgtaaaaatactcgtaaactgttgaaaaatggtgaggcggcgccgccaaaa
gaagatcctatttatttacccgaactgaaatgcagtaaatcggatgcccatttcgtatta
cgtgatggtgcggcgggtatcttcttagcggctagtactttccctaaatcccgtgaaacc
cgtgcacctctggttgaggagctggttcaataccgtgacctgctatggcctaagtatcag
tatttagcggatgcgccagtcactgatgatgaaggcaataaggctgcggtgaagtttagc
cgtaagacgaaagagcaatacgttgcgactgaagtcgatggcaaagccacgggttggtct
gcgcattacgtcaatgggaagtgggtgagtgaatctaccaagaaggccaagaaaggcgca
tag
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integrated database retrieval system
