KEGG   Shewanella oncorhynchi: RA178_10725
Entry
RA178_10725       CDS       T09381                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
sog  Shewanella oncorhynchi
Pathway
sog03030  DNA replication
sog03430  Mismatch repair
sog03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sog00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RA178_10725
   03430 Mismatch repair
    RA178_10725
   03440 Homologous recombination
    RA178_10725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sog03032]
    RA178_10725
   03400 DNA repair and recombination proteins [BR:sog03400]
    RA178_10725
Enzymes [BR:sog01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RA178_10725
DNA replication proteins [BR:sog03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RA178_10725
DNA repair and recombination proteins [BR:sog03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RA178_10725
SSDB
Motif
Pfam: RNase_T Rv2179c-like RNase_H_2 DUF3572 Phage_TAC_11 DNA_pol_A_exo1 DHC
Other DBs
NCBI-ProteinID: WMB75046
UniProt: A0AA50KIG0
LinkDB
Position
complement(2361881..2362507)
AA seq 208 aa
MPTSAANTLVVLDFETTGLSPNQGDRAIEIGAVLIENGVITQRFSELMNPGFRISRFIED
YTGISNQMLRDAAPCNEVMARFADFIADHNLVAHNAAFDQRFLDAEFAQIRHRYRGQFGC
SLLVARRLYQAAPNHQLGTLVRYKQLPTDGTFHRALADAEMTGHLWLAMLADLQQEFGLN
APTFELLQKIAKKTKADVPKFLRQYAVK
NT seq 627 nt   +upstreamnt  +downstreamnt
atgcctacatctgcagctaacactttggtcgtgctcgactttgaaaccacggggctatcg
cccaatcaaggggaccgcgcgattgaaatcggagctgtgctgattgaaaacggcgtgatc
acccaaagattttcagagttgatgaacccaggatttagaataagtcgttttattgaggac
tacacagggatcagcaatcaaatgctcagggatgcagcgccctgcaatgaagtgatggcg
cgttttgccgactttatcgccgatcataacttagtcgcccacaatgcggcatttgatcag
cgctttttagacgcggaatttgctcaaattcgccatcgctatcgagggcaatttggttgc
tccttgctggtggcgagacgtttatatcaagcggcacccaatcatcagttaggtacttta
gtgcgctataaacagttaccaaccgatggcacctttcaccgcgccttagccgatgccgaa
atgactggccatttgtggctggcaatgctggcagaccttcagcaagagtttggtctcaat
gctcccaccttcgagttactgcaaaaaatcgccaagaaaaccaaagcagatgtgccgaag
tttttacgtcaatatgcggttaagtga

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