Shewanella oncorhynchi: RA178_10960
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Entry
RA178_10960 CDS
T09381
Symbol
thiC
Name
(GenBank) phosphomethylpyrimidine synthase ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog00730
Thiamine metabolism
sog01100
Metabolic pathways
sog01240
Biosynthesis of cofactors
Module
sog_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
RA178_10960 (thiC)
Enzymes [BR:
sog01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
RA178_10960 (thiC)
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Ortholog
Paralog
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
WMB75090
UniProt:
A0AA50KGL3
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All DBs
Position
2419814..2421931
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AA seq
705 aa
AA seq
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MSSSNPAVAANAIEITAPESTIPNKSTVANKSAESSQSIVTKAPSRRETRAQAQAFIDTL
APLQHPNSQKIYLEGSSADIRVGMRQILQTDTLVGGTDDAPIMEKNPPIRVYDCAGPYSD
PEADINVRLGLGKLRQNWILARNDTEQLPCATSDFTQQRIADDGLDHLRFEAGSSVIVRP
RRALQGKRVSQLHYARQGIITPEMEYVAIRENMALAQVQDEILNRKAKGEAFGALVGEPI
TAEFVRAEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVW
STRWGADTVMDLSTGRYIHETREWIIRNSPVPIGTVPIYQALEKVNGVAEDLTWEVFRDT
LIEQAEQGVDYFTIHAGVLLRYVPMTAKRVTGIVSRGGSIMAKWCLSHHKENFLYSHFRE
ICELCVAYDVSLSLGDGMRPGSIADANDAAQFAELETLGELVKIAWEYDVQTIIEGPGHI
PMQLIKENMDKQLVHCDEAPFYTLGPQITDIAPGYDHFTSGIGAAMIAWYGCAMLCYVTP
KEHLGLPNKQDVKQGLIAYKIAAHAADVAKGHPSAQIRDNALAKARFEFRWEDQYNLGLD
PETARAYHDESLPQESAKVAHFCSMCGPKFCSMKITQDVRAYAAGLEAAQAKAEQVEAAA
QAMQVTIKTPQELEAAMALKSAQFAASGAEIYHVKDKLVAEAEEA
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtccagttcaaacccagctgtagctgccaatgcgatagaaatcacagcgccagaatcg
acaatccctaataaatcgacagtggctaataaatcggctgagtctagtcaatcaatcgtg
actaaggcgccgagtcgccgcgaaactcgcgcgcaggctcaagcctttatcgatacgtta
gcgccactgcaacatcctaattcacaaaagatttatctcgaaggttccagtgccgatatt
cgcgttggcatgcggcagattctgcagactgacacgcttgtcggcggtactgatgatgcg
cctatcatggaaaaaaatccgccaatccgagtgtacgattgcgccggaccttattccgat
cctgaggccgacatcaatgtgcgtctaggccttggtaaattaagacaaaactggatccta
gcccgcaacgatacagagcaattaccctgcgcgacctcagactttacccaacaaagaatc
gccgatgatggtttagaccatctgcgttttgaggcaggctcgagtgtcattgtccgcccg
cgcagagcgctgcagggcaaacgagtcagtcaattacactatgcccgtcaagggattatc
actcccgaaatggaatatgtggcgatccgcgagaacatggcacttgcgcaagtacaggat
gaaatcctcaatcgtaaagccaagggcgaagcttttggtgccttagtcggcgaaccgatt
accgccgaatttgtccgcgccgaagttgcccgtggccgcgcgattattccgctgaatatt
aaccatcccgaagccgaacctatgattatcgggcgtaattttctggtgaaagtgaacgcc
aatatcggtaactcggcggtgacgtcttccatcgaggaagaagtggaaaagctcgtctgg
tctacccgttggggcgcagatacggtaatggatttatccacgggtcgttatattcacgaa
acccgcgagtggatcatccgcaactcaccagtgcccatcggcacagtgccgatttatcaa
gcgctggagaaagtgaacggcgtggcagaggatttaacgtgggaagtgttccgcgatacc
ttgattgaacaagctgagcaaggtgttgattactttactattcatgctggtgtgctgctg
cgttatgtgccgatgacggctaaacgtgttactgggatcgtttctcgcggcggttcaatt
atggccaaatggtgcctgagtcatcacaaggaaaacttcctctacagccattttcgtgag
atctgtgagctttgcgtcgcttacgatgtatccctgtctttaggtgatggtatgcgtccc
ggatcgattgccgacgctaatgatgcagcccagtttgcagagcttgaaaccttaggtgag
ctagtcaaaatcgcgtgggaatacgacgtacaaaccattatcgaagggccgggacatatc
ccgatgcagctcattaaagagaacatggacaagcagttagttcactgcgacgaggcgccg
ttttacacgcttggcccacaaatcaccgatatcgcacctgggtatgatcatttcacctcc
ggcataggcgcggccatgattgcttggtatggctgcgctatgttgtgttacgtcacgcca
aaagaacacttaggactaccgaataaacaagatgttaagcaaggtttgattgcctataag
attgccgcccatgctgccgatgtggcaaaaggtcatccgagtgcgcaaattcgtgataat
gcgctggcaaaggcgcggtttgaattccgctgggaagatcaatataacttagggctcgat
cctgaaaccgcgcgtgcttatcacgatgaatctttaccgcaggaatccgctaaagtcgcg
catttttgctctatgtgcggccctaaattttgttcgatgaaaatcacccaagatgttcgc
gcctatgccgctggcttagaggcggcacaagcgaaggcggagcaagttgaagcggctgcc
caagctatgcaagtcacaatcaagacgccgcaggagttggaagcggcaatggcgctaaaa
tcggcacaatttgctgcctcgggcgccgagatttatcacgttaaagacaagctcgtcgcc
gaagctgaggaagcctaa
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