Shewanella oncorhynchi: RA178_11045
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Entry
RA178_11045 CDS
T09381
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RA178_11045 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_11045 (ruvB)
Enzymes [BR:
sog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RA178_11045 (ruvB)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RA178_11045 (ruvB)
RecFOR pathway proteins
RA178_11045 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
TIP49
AAA_16
AAA_3
AAA_14
AAA_22
nSTAND3
Mg_chelatase
RNA_helicase
NB-ARC
Bac_DnaA
Rad17
AAA_17
AAA_24
AAA_18
NTPase_1
DUF815
TsaE
AAA_25
NPHP3_N
AAA_11
IstB_IS21
NACHT
ABC_tran
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
WMB75106
UniProt:
A0AA50KIJ3
LinkDB
All DBs
Position
2441874..2442878
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AA seq
334 aa
AA seq
DB search
MIEADRLIQPQIQAQDESIDRAMRPKMLDEYTGQDDTRAQLKVFIQAAKNRNEALDHMLI
YGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLESGDVLFIDEIHRLSP
VVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIPLR
LEFYNIKDLSTIVTRSAKVMELDIDAEGAFEIARRSRGTPRIANRLLRRVRDYAQVKHDG
AVTKFVADHALDLLDVDNEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIEDV
LEPFLIQQGFIQRTPRGRIATARAYQHFELIKPE
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgattgaggcagacagactcatccagccgcagatccaagctcaagatgaatccatcgac
agggcgatgcgccctaaaatgctcgatgaatacacgggtcaagatgacactcgggcacag
cttaaggtgtttattcaagcggcaaagaatcgtaatgaagccttagatcatatgttgatt
tacggtccgccgggattgggtaaaaccaccttagccatgattgttgcgaacgagatgggg
gtgaacattaaatccacctctgggcctgtgctggaaaaagcgggcgatctcgccgcactt
ttgaccaatctcgaatccggtgatgtgttattcatcgatgaaatccaccgattaagccct
gtggtggaggagattttgtatccagcgatggaagattatcagctggatatcatgataggt
gaagggccagcggcacgttctatcaagcttgatttaccaccgtttactctagtgggcgcg
acaacacgggcaggggctttgacttcaccacttcgggcgcgttttgggatcccgctacgg
cttgaattctataacatcaaagatttaagcaccatagtcacgcgttcggcgaaggtgatg
gaactggatattgatgctgaaggtgcatttgaaatcgcacgccgttcacgtggtacaccg
cggatagctaaccgactgcttcgccgcgtgcgggattacgcgcaggtgaagcatgatggc
gctgtcactaagtttgttgccgatcatgcactagacttgctggatgtcgataatgaaggt
ttcgattacatggaccgcaagttactactcgccattatcgataagtttatgggtggccca
gttggactcgataacttagcagcagccataggtgaagaacgcgaaaccattgaagatgtg
ctagagccatttttgatccagcaaggctttatccaacgcacgccccgcggccgtattgca
accgcacgggcatatcaacattttgagttgatcaaacccgagtaa
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