Shewanella oncorhynchi: RA178_11160
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Entry
RA178_11160 CDS
T09381
Symbol
ihfB
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sog03032
]
RA178_11160 (ihfB)
03036 Chromosome and associated proteins [BR:
sog03036
]
RA178_11160 (ihfB)
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_11160 (ihfB)
DNA replication proteins [BR:
sog03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
RA178_11160 (ihfB)
Chromosome and associated proteins [BR:
sog03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
RA178_11160 (ihfB)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
RA178_11160 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-DNA_bdg
HU-CCDC81_euk_2
HU-CCDC81_euk_1
ThiS
Motif
Other DBs
NCBI-ProteinID:
WMB75129
UniProt:
A0AA50Q4Z8
LinkDB
All DBs
Position
2474734..2475021
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AA seq
95 aa
AA seq
DB search
MTKSELIEKLATRQSQLSAKEVEGAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT
GRNPKTGSSVDLEGKYVPHFKPGKELRERVDAVNV
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaatctgaacttatcgaaaaactcgccaccaggcagtcgcagctgtcggcgaaa
gaggttgaaggcgcaatcaaagaaatgttggagcaaatggcaacaacattagaaagcggt
gatcgtattgagatccgtggctttggtagtttctcgcttcactatcgtgcaccgcggact
ggccgtaatccaaagactggttcatcagtcgatttggaaggtaaatacgtcccgcacttt
aagccaggcaaagaactgcgcgagcgtgttgacgccgttaatgtgtga
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