Shewanella oncorhynchi: RA178_12040
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Entry
RA178_12040 CDS
T09381
Name
(GenBank) transglycosylase SLT domain-containing protein
KO
K08309
peptidoglycan lytic transglycosylase [EC:
4.2.2.29
]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sog01011
]
RA178_12040
Enzymes [BR:
sog01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
RA178_12040
Peptidoglycan biosynthesis and degradation proteins [BR:
sog01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
RA178_12040
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SLT
SLT_L
Cucumo_coat
CheR_N
Motif
Other DBs
NCBI-ProteinID:
WMB71175
UniProt:
A0AA50K9S2
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Position
2656498..2658423
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AA seq
641 aa
AA seq
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MCKAVINVVISSAILLAGALNAPAALALTSTQKTFLEAEKALKKQDYATYKPLRAKLGNY
PLAIYLDHDIDIGALNALQGYAAKALIEKYETTPMYNRLRSKYLNNAGSQKRWNDYLAIT
PEAPTDIRLQCYYYEAKLAKGDLKTAYAAAQSLWVFGGSRPKECDPLFNTWTKAGKRTQD
VVWARMMLSFEAGETSLLSFLSQKITTHSNEAKRLVAVYKDPNSLRHTEKFKDKNPIVGD
IVAAGLKRLARKDLDQAINLYERYQKAHRFTPEQAQQLDKYLVRRILIEQDDNYKNYVDN
VLTELKNDDLFERRLRWAIRDHDMRSIARYLNLLQPETLAKERWQYWLYRTNAKEAPESA
IKALATISNERNFYGFAAAQFLNKPVSLNQSPEPVVDANSQKLTDDLGFVRVQELMALDR
YFDARYEWMSLLKRSDNTMRARYGRYAHEQGWYDFGVEASIQGKLWDDIPLRFPMAHQAG
FEHASKKHRVNIDEIRAISRRESAFYLYATSGVGARGLMQIMPATAKATAKKHGARYSDP
KDLYSAELNLNLGSAYYAQLLKEFNQNRILATAAYNAGPSRVRRWLSNSDGKLDAMGFIE
AIPFTETREYVQAVLSYRLIYEAQKQKAQPLFSEAELKFAY
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaaagcagttataaatgtggttatatccagtgcaatattgctcgcaggcgcattg
aatgcccctgctgcacttgcgttaacgtcaacgcagaaaacctttcttgaggccgaaaaa
gccctgaagaagcaagattatgcaacctataaacccctacgggcaaaactaggtaattat
ccgctcgcgatttatttagatcatgatatcgacataggtgctcttaatgccttacagggt
tatgcagctaaagccttgattgaaaaatatgaaaccacacccatgtacaataggttacgg
tctaaatatttaaacaatgctggtagccaaaaacgctggaatgattatcttgcgatcacc
ccagaagcgcctacagacatccgcctgcagtgttattactatgaggcgaaactcgccaag
ggcgatctaaaaacggcttatgcggccgcacaatcactttgggtatttgggggttcgcga
ccaaaggaatgtgatcctcttttcaacacatggaccaaagcgggcaaacgcacacaagat
gtcgtatgggcgcgaatgatgctgagtttcgaggctggtgaaacgagtttactgagtttt
ttatcccaaaaaatcaccacccatagtaacgaagctaagcgtttagtcgccgtctataaa
gatcccaatagcctgcgccataccgaaaagtttaaagataaaaatcccattgtcggtgac
attgttgcagcaggattaaaacgccttgcccgtaaggatctcgaccaagccattaatttg
tatgaacggtatcaaaaggcccatcgttttaccccagaacaagcgcagcaactcgataaa
taccttgttcgccgcattttaattgaacaagatgataactataaaaactatgtcgacaat
gtgctcactgagctgaaaaatgacgacttatttgagcgccgtttaagatgggctatccgc
gatcacgacatgcgcagtattgcccgttacttgaacctactccaaccagaaaccttggca
aaggaacgttggcaatactggctttatcgcaccaatgccaaagaagcgcctgaaagcgcc
ataaaagcgctcgcgacaatcagtaatgaacgtaatttttacggttttgctgctgcgcag
ttcttaaataaaccggtatcactcaatcaaagccctgagcctgttgttgatgccaatagc
caaaagttaacagatgatctcggctttgtcagagtgcaagagttaatggcgctcgaccgt
tatttcgatgctcgctatgaatggatgtcactactaaaacgcagtgacaatacgatgcga
gcacgttatggacgctatgcccatgaacagggctggtacgattttggtgttgaagccagt
attcaaggtaagctgtgggatgatattcctctacgcttccctatggcgcaccaagccggt
tttgagcacgccagcaaaaagcatagggttaacatcgatgagatccgtgcgattagccgc
cgcgaaagtgcattctatctttatgcgacctcgggtgtaggtgcccgtggcctaatgcaa
attatgcccgccacggccaaagctaccgccaaaaaacacggggccagatatagcgatcca
aaggatctctacagcgcagagcttaacctcaatcttggtagcgcttactatgcccagttg
ttgaaagagtttaaccaaaaccgcatcctcgccacggctgcctataacgcgggtccctct
cgcgtgcgtcgctggttatcaaactctgatggcaaactcgatgccatgggctttatcgag
gcgattccctttactgaaacccgtgaatatgttcaagccgtcctcagctatcgattgatt
tatgaggcgcaaaagcaaaaagcacagccattattcagcgaagctgagcttaagtttgct
tactaa
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