Shewanella oncorhynchi: RA178_12070
Help
Entry
RA178_12070 CDS
T09381
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RA178_12070 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_12070 (recB)
Enzymes [BR:
sog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RA178_12070 (recB)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RA178_12070 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WMB71181
UniProt:
A0AA50Q4K5
LinkDB
All DBs
Position
2667688..2671473
Genome browser
AA seq
1261 aa
AA seq
DB search
MSEQMPLNTQALQSAPQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIPAP
LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL
RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSEFLHHAVRDFWREA
CYPLPDYLAQIIAKEFGEPDGLVKQLRPLLGASQAKPLKPALKFDALALSLRQSLERFKL
AWPRGRDGLLALLHSLPLNGTRFGKATDKYPKLAAMFDALDNWLAFGHGLPPLKELEALS
LSELKLNKGGVIPSVSEAPLMDHMEQLATLIAAIKPAFLYSAKLGISERFAQQKQQKNVL
TPDDLLTTLASALNANNETLPKAVATRFPVALIDEFQDTDPLQFAIFSGIYQDRYSFEQS
KNDTENKLSLLMIGDPKQAIYAFRGADIHTYIEARHHTQAHYHLDTNYRSSANMVAGVNH
LFSQHHDPFISQSIPFDSVKTPSSAKGKILTEKTANPAALRLRLLSESAENGLNKTTARH
LLAEDAAAQITHLLTDAANGECHGPKGPLIAKDIAILVRDRNEAAVMKTALSKRHIGAVF
LSRDSVFDTLEAREMALILRSLANPKDERALRSALATALLGYSAEQIHAFNQDEEHRQLL
LEQFFNLHQVWQKRGIMPALLSLANSTKLIDRLLHTASAQTDAQDRDATNGERRLTDFRH
LAELLQQKATELDGMSALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGLEYP
VCFVPFVSLARDNRRRPTPMLYHRTNDAGEQELVWDIEGTDEGWERAKQETLAEDLRLLY
VALTRPVYLCYLYIANHSRQLKNGLKSQLHETAIGYLLGIGDSECDFARICNAAQQLTQD
VEAISIDKVPDDIDERPLPSSQDIAQILSAKTLTRQYSTPWRVGSYSGLVKNTSHGKAAP
GADDEILGTLEYTAAQTLSIPNEASHELQDGMLNRFNFERGANAGSFMHLVLEEIDFTQA
EIDLPLQLPKAMLQYGIAPEWQTVLHTWYLDVLHAPLCAIPHALESQVTGHVSAVKPAHP
DLCLAKLSPQNTLVEMEFYLPLSELKDTELNALLQQFGYESTLKFDDLKGMLKGFIDLTF
EYQGQYYIADYKSNHLGDNINAYHQSALQSAITDHRYDLQYILYSLALHRYLSLRLPSYD
YDSHIGGCYYLFLRGMSAQYPGYGIYYDKPPKALILALDSLFNDNLFHSRLTGAIDTGVT
A
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaacaaatgccgttgaacacgcaagccttacagtctgcaccacaagcgcttgat
cctctcactctgccctttggcggtagtcgtcttattgaggccagcgctggcacaggtaaa
acctacacgatttcaggtctttacttacgcttattgcttggtgatggcattcctgcgccg
ctcacctgcgaacaaattctcgtagtcaccttcaccaatgcggccaccgaagagttaagg
gatcgtattcgtcgccgtattcaagttgcctttaagtgtttcttaggactaacgattgcc
gatccctttgtgcaggcgttgtatgacaacaccccagagagtgaacgcgccattgccctg
cggcggttcgatctcgcccttaaatccctcgatgaagcggcgatttttaccatccacggt
ttctgtcagcgaattttatcggatctcgcctttgagtcttccttgctgttcgaatcggac
tttaccttggacgacagcgaatttttgcaccatgctgtgcgggatttttggcgtgaggcc
tgttatccgctgcccgattacttagcgcaaatcattgccaaggaatttggcgagcccgat
ggtttagtcaaacagttgcgaccgctccttggcgccagtcaagcaaagcctctgaaaccc
gcgcttaagtttgatgccttagccctgtcactacgccaaagtttagagcgctttaaatta
gcttggccaaggggacgcgatggcttattggcattgctacacagtttgccactcaacggc
acccgctttggcaaagcaacggataagtaccccaagctagccgccatgttcgatgcgcta
gataactggctcgccttcggtcatgggttaccgccgctgaaagagttagaagccttgtcc
ttgtctgagttaaaactcaacaagggcggcgtgatcccaagtgtgagtgaagcgccgcta
atggatcatatggagcaactcgccacattgattgccgccattaaacccgcatttttatat
agcgcgaaactcggcataagcgagcgatttgcccagcaaaaacaacaaaaaaatgtgctg
acccctgatgacttactcacgacattagcgagcgcgttaaacgccaataatgaaaccttg
cccaaagccgtggcaacacgtttccccgtcgcgcttattgatgaattccaagataccgat
ccgctgcaatttgcgatcttctctggcatctaccaagaccgttactcgtttgaacaaagc
aaaaacgatacagaaaataagcttagcctgttgatgattggcgatcctaagcaagccatt
tatgcctttcgcggtgccgatatccatacctatattgaggcccgtcatcatacgcaggcc
cactatcatctggataccaactaccgctcaagcgcaaacatggtcgctggggttaaccat
ctgtttagccagcatcacgatccgtttatcagtcaatcgatcccctttgatagcgtgaaa
acgcccagcagtgctaaagggaaaatcctcactgaaaaaaccgccaatcctgccgcctta
agattaagactcttaagcgaaagcgcagaaaacggcctcaacaaaaccacggcaagacac
ttgctcgcagaagacgcggcggcacaaattacccatttactgacagatgcagccaatggc
gaatgccacggcccgaaagggcctttgatcgctaaagacatcgctatcctagtgcgggat
cgcaacgaagcggcagtgatgaaaaccgcattaagtaaacgccacataggcgcagtattt
ttaagtcgcgacagtgtgttcgatacccttgaagcgcgggaaatggcgttaattttgcga
tctctggcgaaccctaaagatgaacgggcactgcgcagcgccctagccacggcattatta
ggttatagcgccgagcaaatccatgcctttaaccaagatgaagagcacagacagctgtta
ttagagcagttttttaacttgcaccaagtgtggcaaaaacgcggtatcatgcccgcgcta
ctcagccttgccaatagcactaaactgattgaccgtttactgcacaccgccagtgcgcaa
actgatgcacaagaccgagatgccacaaacggtgagcgtcgcctgacggattttcgccac
cttgccgagctattacaacaaaaagccaccgaacttgatggtatgagtgccctactcaat
tggtatgaacaacaactgattgataacacgggaaccgatgaacagcagctgcgccttgag
agcgagcagaatctagtgcaaattgtgactatccataagagtaagggccttgagtatccc
gtgtgttttgtgccctttgtcagcctagcccgtgataatcgccgccgcccgacgcctatg
ctgtaccacagaaccaacgatgcaggtgagcaagagctagtgtgggatatcgaaggcacg
gatgagggttgggagcgcgccaaacaagaaaccttggccgaagacttgcgcttgctatat
gtggcgctcactcgcccagtgtatttgtgttacttgtatatcgccaatcacagtcgtcag
cttaaaaatggccttaaaagtcagctgcatgaaaccgctatcggctatctattgggcata
ggcgattcagaatgtgactttgcccgtatctgcaatgctgcgcagcagctcacccaagat
gtggaagccataagtattgataaggtgcccgatgacatagacgagcggccattgccctca
agccaagacatagcacaaatactgagcgcgaaaaccttaacccgccaatacagcacgccg
tggcgagtcggcagttattcaggcctagttaaaaataccagccatggtaaagccgctccg
ggtgccgacgatgaaatattaggtacgcttgaatatacggctgcgcaaacactctctatt
cctaatgaggcaagccatgagctgcaggatggcatgctcaatcgctttaactttgagcgc
ggcgccaatgccggtagctttatgcatttagtgttagaagagattgattttacgcaggca
gaaatcgacttaccgctgcaattgcctaaagccatgctgcaatatggtatcgcgcccgag
tggcaaacagtattacatacttggtatttggatgtgctgcatgcaccgctctgcgcgata
ccgcacgccttagagtcgcaggtcacggggcatgtaagcgccgtcaaacctgctcatcca
gatctgtgcttagccaagttatcgccgcagaataccttagtcgaaatggagttttattta
cccttaagcgaacttaaagatactgagctcaatgcgctactgcagcagtttggctatgag
tcgacacttaagtttgatgatctcaagggcatgctcaaaggctttatcgatttaaccttt
gaataccaaggtcaatattatatcgccgactataagtcgaatcatttaggcgacaacatc
aatgcctatcatcagagcgcactgcaaagcgcaataaccgatcacaggtatgatttgcag
tacattctctattcattggcgctacacaggtatttgagtttacgcctgccaagttatgac
tacgacagccatatcggcggttgttattacttgttcttacggggaatgtcggctcaatat
cccggctatggtatttattacgacaaaccgccgaaggcacttattctcgcgctagattca
ctttttaatgacaatttatttcacagcagattgactggtgcaatagatacaggagtcacg
gcatga
DBGET
integrated database retrieval system
