Shewanella oncorhynchi: RA178_12100
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Entry
RA178_12100 CDS
T09381
Name
(GenBank) RsmB/NOP family class I SAM-dependent RNA methyltransferase
KO
K03500
16S rRNA (cytosine967-C5)-methyltransferase [EC:
2.1.1.176
]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sog03009
]
RA178_12100
Enzymes [BR:
sog01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.176 16S rRNA (cytosine967-C5)-methyltransferase
RA178_12100
Ribosome biogenesis [BR:
sog03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
RA178_12100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Methyltr_RsmB-F
Methyltransf_31
RsmF-B_ferredox
Ubie_methyltran
FtsJ
Methyltransf_25
TRM5-TYW2_MTfase
GCD14
Methyltransf_4
MTS
PrmA
Methyltransf_15
Methyltransf_5
PYRIN
PCMT
Motif
Other DBs
NCBI-ProteinID:
WMB71187
LinkDB
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Position
complement(2678768..2679982)
Genome browser
AA seq
404 aa
AA seq
DB search
MLNSPLSASSNELVISILTMVLSQGKPLDRAYSQHFSGLQLVPAEQARIALTTGDILRRL
NLYCYLAEISPDEMERFGSKLLNAWHLFHGLELPKMQYSLQVDEVRLAERIEQAKTKPVL
WDGCPEWLDVMGREQLGESWEKERAALSTAPKRFLRANSLKVTRDELAAKLAAEFVSTLC
VDGVDSALEVTSDSALFRTQSFKDGLFEQQDAGSQRVAAALDAKPGMKVIDACAGAGGKT
LHIAAQMQGKGRLLAMDVEQWKLDKLKERARRNGAHNVETRVIASSKTIKRLKLSADRVL
LDVPCSGLGVLKRNPDAKWRDTVERLPVLMELQKHILNSYSRMVKVGGIVVYATCSIFPC
ENRGQVDAFLAENPNFRLIEDESISPADSGFDGFYLAKLERIQE
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgttgaattctccgctttctgccagctcgaacgaattagtgatcagtatcttaactatg
gtgctgagccaaggaaaacccttagatcgggcctattctcagcatttttctgggttgcaa
ttggtacccgccgagcaggcgcgtatcgcattaacgacgggtgatatcctacgtcgttta
aatttatattgttatctggcggaaattagtccagatgagatggagcgttttggctctaaa
ttgcttaatgcctggcatttatttcatgggcttgaactgcctaaaatgcaatattcgctg
caagttgatgaggtgcgtttagctgagcgtatcgagcaagcgaaaactaagcctgtgttg
tgggacggttgccctgagtggctcgatgttatgggccgtgagcaactaggtgagtcttgg
gaaaaagagcgcgccgcgttaagtacagcgccgaaacgttttttacgcgctaatagcctt
aaggtgactcgtgatgaactggccgctaagcttgccgctgagtttgtgagcacgctctgt
gttgatggggttgattccgcccttgaagtgacctccgattctgccttgttccgtacacaa
agctttaaagatggcttattcgagcagcaggatgcgggctctcagcgcgtagctgcggcg
cttgatgccaagccaggcatgaaagtgattgatgcttgcgcgggtgcgggcggtaaaacc
ttacacatagctgcgcaaatgcagggtaaaggacgcttgttggccatggatgtggagcaa
tggaaactcgacaaactcaaagagcgtgcccgtcgtaatggggcacacaatgtcgaaacc
cgtgttatcgccagcagtaaaaccattaaacgcttaaagctcagtgccgatagagtattg
cttgatgtgccttgctctggtttgggtgtattaaagcgtaatcccgatgcaaaatggcgt
gataccgtagagcgtttacccgtgttaatggaactgcaaaaacacattttgaacagttac
agccgcatggtcaaagtcggtggcatagtcgtttatgcgacttgttctatcttcccttgc
gagaaccgcggtcaagtggatgcgtttttagccgagaaccccaactttcgcctgattgag
gatgaaagtatcagcccagccgatagcggctttgatggcttttaccttgccaaacttgaa
cgtattcaagaataa
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