Shewanella oncorhynchi: RA178_12660
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Entry
RA178_12660 CDS
T09381
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sog03019
]
RA178_12660 (hrpA)
Enzymes [BR:
sog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RA178_12660 (hrpA)
Messenger RNA biogenesis [BR:
sog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RA178_12660 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
SLFN-g3_helicase
nSTAND3
T2SSE
NACHT
HA2_N
ResIII
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WMB71288
UniProt:
A0AA50Q4S6
LinkDB
All DBs
Position
complement(2808702..2812583)
Genome browser
AA seq
1293 aa
AA seq
DB search
MDLNSDKHPLSNAFLNLCYQSDASRIRRRLFKLNKEADSDKKTQVLAQLSEQAQAAFEKV
EQRRNARPKIHYPENLPVSLMRDDIARAIAGNQVVIIAGETGSGKTTQLPKICLELGLGC
RGMIGHTQPRRLAARSVASRVAEELQSPLGEVVGFKVRFADALKSDSYIKLMTDGILLAE
LTSDRNLDQYDTIIIDEAHERSLNIDFILGYLKQILKRRPDLKVIITSATIDVERFSKHF
NNAPIIEVSGRTFPVETRYRPLVQDSDADLDQIEGIFAAVDELVAEGLGDILIFMNGERE
IRDTAEQLSRRNYRDTEILPLYARLSYGEQSKVFSSHRGRRIVLATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPA
FTDPEILRTNLASVILQMLAIGLGDIAGFPFIEPPDPRHIRDGFLLLEELQAVESKHGKL
VLTPLGRNLAQIPVDPRLARMVVESQQLGCLNEVLVIAAGLSIQDPRERPMEKKQASDEA
HRRFADPSSDFVSWINLWQHLKDQQKELSASQFRKKCRDEYLAYLRVREWQDLYAQLKQA
VHDLKWRLNDTPANYDSLHRALLSGLLSHVGFKDNNNEYLGARNRKFFVFPGSPLAKKGP
KWIMAAELTETSRLFARCCAKIEPEWLEPLAAHLIKKSYVEPHFEAKPGSVIALENQVLY
GLTVVHRRKVQYGPIDPVEAREIFIRSALAEGQLQTQEAFFVANQKLLEDIESLEHKSRR
RDILVDEQVLVDFYEPRIPEGIYNAQLFFGWWKKAKREQPDLLDFSKALLMQRNADHIST
LDFPDTWHKGNLRLQLSYHFEPAAADDGVSVHIPVALLNQIDDSDFDWLVAGLREEKCIA
LIKSLPKSLRRNFVPAPDYARACVQAMVPFSASLLEAMCKQLLRMSGTRISPEDFDLTQL
PAHLQMNFKIEDDKHNLVAEGRVLDTLKAELQGVVAKAIRQVADKGIEQEALTEWSFGDL
PQQYQQQKGNYQVRAFPALIDKKDSVAIKLFDDEFEALDAHRQGLRRLLLLNIPSPVKHL
QQALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRNQAQFEQAKDWVRQEL
NPTAEQIALKVEQILTLYQSIKKRLKGKISLDIAFAMSDIQSQLDKLVFKGFVESCGWNR
LADVARYLKAIEIRVEKLPVDPTRDRLHMQSINKVQEALIAQLAKVPRSMPTPPALIEAR
WMIEEYRVSCFAQVLGTAYPISEKRILNHIQQV
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttggatttgaactcagacaaacatccgctatcgaacgcctttcttaatctttgttatcag
agcgacgcgtcgcggatccgtcgtcgtttatttaagctcaataaagaagccgactcagat
aaaaagacccaagtcttagctcagctgagcgagcaagcgcaggcggcgtttgagaaggtt
gagcagcgccgtaacgctcggcctaaaatccactatcctgaaaacctgcctgtttccttg
atgcgcgatgatattgcacgcgcgattgcgggcaatcaagtggtgatcatcgctggtgaa
acgggctcgggtaaaacgacccagttacctaaaatctgtttggaactgggcctaggttgc
cgtggcatgataggccacacccagccaagacgattggctgcccgcagtgtggcgagccga
gtcgctgaagaattacaaagtccgctcggtgaagtggttggctttaaagtgcgttttgcc
gatgcgcttaagagtgactcttatatcaagttgatgaccgacggtattttactggcggaa
ttaacctccgatcgtaatcttgatcaatacgataccatcatcatagatgaggcccacgag
cgcagcctcaacatcgattttattctgggctacctcaaacaaattctcaaaagacgcccc
gatctcaaagttattatcacgtcggcgaccatagacgttgagcgtttttctaagcatttc
aacaatgcacctattattgaagtgtcgggccgtacctttccggtcgaaacccgttaccga
cccttagtgcaagatagcgatgccgatttagatcaaatcgaaggcatttttgccgccgtc
gatgaactggtggccgaagggctgggtgacattctgatctttatgaacggcgagcgggaa
attcgcgatacggccgaacaattaagtcggcgtaattaccgcgataccgaaattttgccg
ctgtacgcacgtttatcttacggtgagcagtctaaagtcttcagtagtcacagaggtcgg
cggattgtattagcgaccaacgtggcggaaacctcgctgactgtgccgggcattcgctac
gttatcgacccaggtacggcgcgtatcagccgctatagctatcgcactaaggtgcagcgt
ttaccgattgaacctatctcgcaagcgagcgccaatcagcgccaaggccgttgtggtcgg
gtagggccgggtatttgtattcgtttgtacgatgaggcggattttaataatcgtccggcg
tttaccgatcccgaaattttgcgcactaacttggcttcggttattttgcagatgctggcc
atcggcctaggtgatatcgccggtttcccctttatcgagccacccgatccacgccatatc
cgcgatggtttcctgttgctcgaagaattacaagcggttgagagcaaacacggcaagcta
gtgctgacgccacttgggcgcaacttggcgcaaattcctgtggatccgcgtttggcgcgt
atggtggtcgagagtcagcagttaggttgtttaaacgaagtgctagtgattgccgcgggc
ttatcgattcaagatccccgcgagcgtccgatggagaagaagcaagccagtgatgaagcc
catcggcgttttgccgatcccagttccgatttcgtcagttggataaacctgtggcagcac
ttaaaagatcaacaaaaagagttatctgctagtcagttccgtaaaaagtgccgcgatgaa
tatttggcctatttgcgcgttcgcgagtggcaggatttatacgcccagcttaaacaagcc
gtgcacgatttaaagtggcgcctaaacgatacgccagccaattacgacagcttgcaccgt
gcgctcttatcgggcttattgagccatgtgggttttaaagataacaataacgagtactta
ggtgcccgtaatcgtaaattctttgtgtttcccggttcgcctttggccaaaaaaggccct
aagtggatcatggcggctgagcttaccgaaacatcgcgcctatttgctcgctgctgcgcc
aaaatcgaacctgaatggctagagcccttagcggcgcatttgattaagaaaagctatgtc
gagccccattttgaggcaaaacctggcagcgttatcgcccttgagaatcaagtgctctac
ggcttgacggttgtgcaccgtcgtaaagtgcaatacggccccatcgatcccgttgaagcg
cgtgagatttttatccgcagcgctttggcagaagggcaattacagacccaagaagcattt
tttgtcgctaaccaaaagttgctcgaagacattgaatccctcgaacataaatcccgtcgc
cgcgatattttggtggacgagcaagtgttggtggacttttacgagccgcggatcccggaa
gggatttacaacgcccagctgttttttggctggtggaagaaggcaaagcgcgagcaaccg
gatttactcgatttcagcaaagcactgttaatgcagcgcaatgccgaccatatttcgacc
ttggattttcccgatacgtggcacaagggcaatttgcgcctgcagctaagttatcacttt
gaacccgcggcggcggatgatggtgtgtcggtgcacattccggtggcgctacttaatcaa
atcgacgatagcgatttcgattggctagtggcagggctaagggaagaaaagtgcatcgcg
ctgatcaaatctttgcctaagagtttacgacgcaactttgtgcccgcgcctgactatgcc
cgcgcttgtgtgcaggccatggtgccttttagtgccagtttgcttgaggccatgtgcaag
caattattgcgcatgagtggcacgcgtatatcgccggaagattttgatttaacgcaactg
cccgcgcatttgcagatgaactttaaaatcgaagacgataaacacaacttagtggctgaa
ggtcgggtgctcgataccttaaaagctgagctgcagggtgtggttgctaaggccattcgt
caggtggcggataaaggtatagagcaagaagcgttaactgagtggtcctttggcgatttg
ccgcagcagtatcagcagcaaaaaggcaattaccaagtgcgggcgtttccggcgctgatc
gataaaaaagacagtgttgcgatcaaattatttgatgatgaatttgaggccttagatgcc
catcgccaaggtctgcgacggttattgctgctaaacattccatcaccggtgaaacactta
cagcaagctttgccgaataaggcgaaattggcgatgtatttcaatcccttcggtcaagtg
caaatcttgattgatgacattattgccgccgctgtgcagcaattgttggatgaaaaagcc
ctcgatgtgcgtaatcaagcccaatttgagcaggcaaaggactgggttcgccaagaactc
aacccgaccgccgagcaaattgcattgaaggttgagcagattttgaccttgtatcagagc
attaaaaagcgtcttaagggcaaaattagcttagatattgcctttgctatgagtgatatt
caaagccaattagacaagttagtgtttaaagggtttgtcgaatcctgtggttggaatcgg
ttagccgatgtggcgcgttacttaaaagcgattgaaatccgtgtcgagaagttgcccgtt
gatccgacccgtgaccgtttgcatatgcagagcatcaacaaggttcaagaagctttaatc
gcacaactggctaaagtaccgcgttctatgccaacaccgcctgcgttaatcgaggcacgc
tggatgattgaagagtaccgtgtttcctgttttgcgcaggtgttaggcacggcgtatccg
atatctgaaaagcgtattttgaatcatattcaacaggtttaa
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