Shewanella oncorhynchi: RA178_12755
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Entry
RA178_12755 CDS
T09381
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sog01002
]
RA178_12755
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sog01011
]
RA178_12755
Peptidases and inhibitors [BR:
sog01002
]
Cysteine peptidases
Family C82
RA178_12755
Peptidoglycan biosynthesis and degradation proteins [BR:
sog01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
RA178_12755
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
WMB71307
UniProt:
A0AA50KAA0
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All DBs
Position
complement(2837173..2838777)
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AA seq
534 aa
AA seq
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MILKKIIRYLPPSMRVTLNVRELKLIEQEFNIANLKALQINSMPTRRNLAQLLLSLFFCI
PIILVPKVSAADGAQSLTSNSSIAAQPNLEGKAEDLTAVLPLAALVPQVLLLDLAGVNPV
FGQHYRDLTLSPNTLSTADLVRIQADVTGYWHYVMTSAECNNAGAPETVSSVIPEDPQYQ
RVLKQIAHLVQLDTIEPWETLVLDEKLTLGMSHQIVDTIAKRVWILGDLATEPRVNQVYT
EELMIGIKRFQQKHGLKQDGVIGKQTLFWVNQSPRARAVLLAKNTIRQRVFERKLEPSYL
LINVPAFEMTLVDNGTPVLSSKVIVGKSSRQTPILDSQISSVVLNPSWRVPSSILRRDIL
PQIQRNGHYLKERQFDVYDYNGQQVQRMPEEWQALASASFPYQLVQRPGAKNALGKYKFH
FDNSFSVYLHGTSEPSLFKKDDRALSSGCIRIEKATELAQWFKEHLVKDKRLWDKLAPGI
TEPQWFSLSEKLPVHLVYWTAWLDDSGQEQYRRDIYHLEPELTNAVPATVLEQH
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgatattgaaaaagatcattcgctatttgcccccatccatgcgtgtaacgctaaacgtg
agagaactcaaattgatagagcaggagttcaacatcgcgaacttgaaagcattgcagatt
aactcgatgccgacgaggcgtaatctcgcgcaactattacttagcctttttttctgtatt
ccaataattttagtgccaaaggtaagtgcagctgatggcgctcaatccctgacatcaaat
tcgagtattgctgcgcagccaaatcttgagggtaaagctgaagatcttactgctgtgctg
ccgcttgcggccttagtgccacaggtgttgctattggatctcgcaggcgttaatccagta
tttggccagcattatcgtgacttaacactttctcctaataccttatctactgctgattta
gtacgaatccaagctgatgttaccggttactggcattatgtgatgacatccgcagaatgt
aacaacgctggagccccagagacggtttcatccgttattccagaggatccccaatatcaa
agggtgcttaagcaaatcgcccatttagtgcaattggacacaattgaaccatgggaaact
ttagtgctagatgaaaagttaaccttaggaatgagtcatcagatcgttgataccatagca
aagcgtgtgtggatattgggagacttagccactgagcctagagtgaatcaagtttatacc
gaagaacttatgattggcattaagcgctttcagcaaaagcatgggttaaaacaggacggg
gtgataggtaagcagaccttattttgggtgaaccaatcgccaagggcgagggcggtacta
ttagctaaaaacactattcgacaaagagtgtttgaacgtaaattagagccgagttatttg
ctgattaatgtgcccgcttttgagatgacgttggtcgataatggtacgccagtgttaagt
tccaaggtcattgtgggtaaatcttctcggcaaacaccgattttggacagtcagatttct
agcgtggtgcttaaccctagttggcgagtgcctagcagcattttacggcgggacattctg
ccgcaaattcagcgaaatggtcattatcttaaggaacgtcaatttgatgtgtacgattat
aacggtcaacaggtgcaacgcatgccagaggaatggcaggccttagccagcgcttcgttt
ccctatcagcttgtacaacgcccaggggcgaagaatgcattaggtaaatataagtttcac
tttgataacagtttcagtgtctatttacatggaacttctgagccaagtctctttaaaaag
gacgatagggcactatcatctggctgtattcgtattgaaaaagccactgaattagcccag
tggtttaaagaacatttagtgaaagacaaacgtttatgggacaagttagcccctggtatc
actgaaccccagtggttttcactttccgaaaagctgcccgtgcatctggtttactggact
gcatggttagacgatagtgggcaggagcaataccgtcgcgatatttatcatttggaacct
gagctgacgaatgctgtgcctgccacggttttggaacaacattaa
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