Shewanella oncorhynchi: RA178_12910
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Entry
RA178_12910 CDS
T09381
Symbol
fadD
Name
(GenBank) long-chain-fatty-acid--CoA ligase FadD
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog00061
Fatty acid biosynthesis
sog00071
Fatty acid degradation
sog01100
Metabolic pathways
sog01212
Fatty acid metabolism
sog02024
Quorum sensing
sog04146
Peroxisome
Module
sog_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
RA178_12910 (fadD)
00071 Fatty acid degradation
RA178_12910 (fadD)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
RA178_12910 (fadD)
09145 Cellular community - prokaryotes
02024 Quorum sensing
RA178_12910 (fadD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sog01004
]
RA178_12910 (fadD)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sog04147
]
RA178_12910 (fadD)
Enzymes [BR:
sog01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
RA178_12910 (fadD)
Lipid biosynthesis proteins [BR:
sog01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
RA178_12910 (fadD)
Exosome [BR:
sog04147
]
Exosomal proteins
Exosomal proteins of breast milk
RA178_12910 (fadD)
Exosomal proteins of breast cancer cells
RA178_12910 (fadD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Pept_S41_N
Motif
Other DBs
NCBI-ProteinID:
WMB71338
UniProt:
A0AA50KA69
LinkDB
All DBs
Position
complement(2872457..2874130)
Genome browser
AA seq
557 aa
AA seq
DB search
MDQPWINHLPEDVPAEINVEQYSSLVDMFETAVAKYEDQPAFINMGATLTYRKLEERSRA
FAAYLQNELKLEKGDRVALMMPNLLQYPIALFGVLRAGMVVVNVNPLYTPRELKHQLIDS
GAKAIVVVSNFARTLEEVVEQTPVESVIITSLGDQLSAPKRTLVNFVVKYIKKLVPKYDL
PHALSMRDTLSTGRRMQYIKPEVTNDDLAFLQYTGGTTGVSKGAMLTHGNIVANVLQADG
AYSPALNDGSEFVVTALPLYHIFALTVNCLLFLHKGSQNLLITNPRDIPGFVAELKKYPF
TALTGVNTLFNALVNSDDFSQLDFSRLKLSIGGGMAVQKAVADKWQTITKTRLLEGYGLT
EASPLLTCCPYNLDGYNGSIGFPAPSTLIQIRNDDGKVLAQGETGELFGKGPQVMKGYWQ
RPEETAKVIDTDGWLATGDIGYMDEKGFFYIVDRKKDMILVSGFNVFPNEVEEVVALHPK
VIEVAAVGVPNDASGELVKVFVVAKDKSLTAEDIIKHCRIHLTGYKVPKLVEFRDELPKT
NVGKILRRELRDEAKRA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggatcagccttggattaatcatttgccagaagatgtgcctgctgaaattaatgtggaa
caatactcatcgcttgtcgatatgttcgagacagcggtggctaagtatgaagatcaacct
gcatttatcaacatgggtgccacgctaacctatcgtaaattggaagaacgcagccgagca
ttcgctgcgtatttacaaaatgaattaaagcttgaaaagggcgaccgtgtcgccttgatg
atgccaaacctgttgcagtatcccattgcactgtttggtgttttgcgtgcaggtatggtg
gttgttaacgttaacccactttatacaccgcgcgagcttaaacatcagttgattgactct
ggcgccaaagccattgtggtggtgtcaaacttcgcccgcactttagaagaagtggtcgag
caaactcctgttgaaagcgtgattatcaccagtttaggtgatcaattaagtgcaccaaaa
cgtaccttagtgaactttgtggtgaagtacatcaagaagttagtgccaaaatacgattta
ccccatgccttatcaatgcgcgataccttatcaacgggtcgtcgcatgcaatacatcaaa
ccagaagtcactaacgatgatttagcgtttttacaatacacaggaggcaccactggggtc
tctaaaggcgctatgttgacccatggcaatattgtcgcaaacgtgttgcaggccgatggt
gcatattctcccgctttaaacgatggcagtgagtttgtcgtaacggccttgccgctgtat
cacatcttcgccttgaccgtgaattgcctgctgtttttgcacaaaggtagtcagaattta
ctcatcaccaatcctcgcgatatcccaggatttgtggctgagttgaaaaagtatcctttt
accgcattaactggggtgaataccttatttaacgctttagtgaacagtgatgatttttcc
cagttggatttctcacgcttaaaactctctatcggtggcggcatggcggtacagaaagcc
gtggcggataaatggcaaaccattactaaaacccgtttacttgaaggttatggtctgacg
gaagcctcacccttattaacctgttgtccatataacttagacggttataacggttcaatt
ggttttcctgcaccttcgacactgatccaaatccgtaatgatgacggcaaggtattagct
caaggcgaaaccggcgagctgtttggtaaaggtcctcaggtgatgaaaggctattggcaa
cgtcctgaagaaaccgccaaagtaatcgacactgacggctggttagccacgggtgatatt
ggttacatggatgagaaaggtttcttctatattgtcgaccgtaagaaagacatgatctta
gtctcaggatttaatgtattccctaacgaagtcgaagaagtggtcgcacttcatcccaaa
gtgattgaagtggctgccgttggtgtgccaaacgacgccagtggcgagttagtgaaggta
tttgtggtggcaaaagataaatctttaaccgctgaagacatcattaagcactgccgtatt
catttaacgggatataaagtgccgaagctggtagaatttagggacgagttacctaaaacc
aacgtgggtaaaatcttgcgacgagagcttagagacgaagctaagcgcgcgtaa
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