Shewanella oncorhynchi: RA178_13905
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Entry
RA178_13905 CDS
T09381
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA178_13905 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sog03019
]
RA178_13905 (rne)
03009 Ribosome biogenesis [BR:
sog03009
]
RA178_13905 (rne)
Enzymes [BR:
sog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RA178_13905 (rne)
Messenger RNA biogenesis [BR:
sog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RA178_13905 (rne)
Ribosome biogenesis [BR:
sog03009
]
Prokaryotic type
rRNA processing factors
RA178_13905 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WMB71519
UniProt:
A0AA50KAD5
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All DBs
Position
3075156..3078581
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AA seq
1141 aa
AA seq
DB search
MQRSAMFDDLYLKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIY
KGKITRVEPSLEAAFVDYGADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVSEGQEVIV
QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPA
GMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQVKGAPFLIHQESNVIVRAIRDYL
RRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVPLFTHFQIESQIESAFQREV
RLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLV
VIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHI
CPRCHGQGTIRSTESLALSILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITE
QRHDVEVYVIPDAHMMTPDYRVIRHRSDDEISESSYKRIEHPEAKLYEPRKLERTAAPIP
ALKGFAAPQKVEQAPSPTVKVEAPQPGFFSKLVSAISAMFAPSEKAEPVKVVETKATDTS
AANANRRNRRNDTRRPRNAQDADKAKEGTREPRSRNPKKPTDAVVSTQERPVREKEETAK
RPAKAEPKPRVQAPKDVVADIEADDAPKQEVARERRQRRNMRRKVRIDNGHNTPDNAIPI
APEDAAEVLAEIAALNAAAASTISVNAKAEVIAQTPVETKAPRTRRQPRKEAAPAQEAQE
NIVLEETTVISTVVETPAVDAVNVAENTLVDTAAHTVAADAVSQDSEVDADNENANADDQ
SKREQRDGQRRSRRSPRHLRAAGQRRRRDEDDQGTSTPAQFVPNDELGADQEYPSEIVSV
RVETPVVATQTTAVTEPAVKTADVEIAETSSTPAVEAPAVVKVEAKVEPQPQANDVAAVE
TKPVVTKTTETKAEEPKAADVKVDLASIVETQVTSVTAEAVVVVVPSVESSVTKSVAVPK
TEAAKTETLVEPSVAPSAEVKEAVKATASAPMARPAAIAKPQATVQTAPTTPQITDAVVV
SKPKAASRFGSMVSSDMTKPVVEVREQVAVPKGREYENTANEESTAKIKLANGAESDMAR
P
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcgcgatgtttgatgacctctatttaaagaagaatgacgtcatcatgaaa
cgtatgttaatcaatgcaactcaatcagaagagttgcgtgttgcccttgttgatgggcaa
caactgtatgatctagacattgaaagcccaggtcatgagcaaaaaaaatcaaacatttac
aaaggtaaaattacccgagtagaaccgtctttagaagccgctttcgtcgactacggtgcc
gatcgtcacggctttttgccactgaaagaaatcgctagagaatatttcccgaagggatat
tcgttccagggtcgcccaaatatcaaagaagtggtcagtgaaggacaggaagttattgtc
caaattgacaaagaagaacgcggcaataaaggtgcagccttaacgaccttcatcagcctt
gcaggctcttacttagtattaatgccaaacaacccacgtgctggcgggatttctcgtcgt
atcgaaggtgatgaacgcactgagctaaaagaagcgatggctgacttagaagtgcctgcg
ggcatgggtcttatcgtgcgtactgcgggtgtaggcaaagaatctgccgagttaaagtgg
gacttaaaagttctacaacaccactgggcggcgatcaccgaagcttcacaagttaaaggc
gcacctttcttaattcaccaagaaagcaatgtgatagttcgcgctattcgtgactattta
cgccgtgacgtgggcgaaatcctcatcgatcatccacgtatttttgaagaagcgaagcaa
catatcgccttagttcgccctgatttcgttgagcgcgtaaaactgtacgaagctgaagtg
ccattattcactcacttccaaatcgaatcacaaattgaatctgccttccaacgcgaagtg
cgtctgccatctggcggttcaattgttatcgacccaactgaagcattaacctcaatcgat
atcaactctgcccgtgccactaaaggcggcgatattgaagaaacagcactgaacactaac
ctcgaagccgccgatgaaattgcccgccaattgcgcctccgcgacttaggtggcttagtg
gttatcgactttattgatatgacgcctgtgcgccatcagcgtgaagttgaaaaccgctta
cgtgatgctgttcaccatgatcgtgctcgcgtgcagttaggtcgcatttctcgtttcggt
ttgatggaaatgtcgcgtcaacgtctgcgcccctctttagaagaatctgcagcgcatatc
tgccctcgctgtcatggccaaggcacgattcgcagtaccgagtctttagcactgtcaatt
ttacgtttgatggaagaagaagccatcaaagaaaacacctcacaaatcgaagcgattgtg
cctgtggatgttgcagcttttttgttaaacgagaaacgcaaagccattcgcatcacagaa
cagcgtcacgatgtcgaagtgtatgtgatacctgacgcacacatgatgacgcctgattac
cgcgtgatccgtcaccgtagtgatgatgaaatcagtgaatcaagctataagcgtatagag
catcctgaagccaaattgtatgagccacgcaaactggaacgtactgcggcgcctattccg
gcattaaaaggttttgcagcgccacaaaaagtagaacaagccccatcaccaacggtgaaa
gttgaagcgccacaaccaggcttcttcagcaagcttgtgagtgcaatcagtgccatgttt
gcgccaagtgaaaaagctgaacccgtaaaagttgttgaaactaaagcaactgataccagt
gcggctaacgcaaatcgccgtaaccgtcgtaatgacactcgccgcccacgcaatgcccaa
gatgccgacaaagcaaaagaaggcactcgtgagccgcgtagccgcaatccaaaaaagccg
actgatgcagtagtcagcacacaagaacgtccagtacgcgaaaaagaagaaacggctaaa
cgtccagctaaagctgaaccgaagccacgcgtacaagcgccaaaagatgttgttgccgac
attgaagcagatgatgcccctaagcaagaagtcgcccgcgagcgtcgtcagcgccgtaac
atgcgtcgtaaggtgcgtatcgataatggccataatacgccagataatgcgatcccaatt
gcacctgaagatgccgcagaagtgttagcggaaattgcagcccttaacgccgcagcggca
agtactatcagtgttaatgccaaagctgaagtcattgcccaaacgccagtagaaactaaa
gcgccaagaacacgtcgccagcctcgtaaggaagctgcacctgctcaagaagcgcaagaa
aatattgtgctagaagagacaactgtaatttctactgtagtagaaacacctgctgttgat
gctgttaacgtagctgaaaacaccttggttgacacagcagctcatactgtagcagcggat
gctgtatcgcaagatagcgaagttgatgcagacaacgaaaatgcgaatgctgatgatcaa
tcaaaacgcgagcaaagagatggtcaacgtcgtagccgtcgtagccctcgccaccttcgt
gcagcgggtcaacgtcgtcgtcgcgacgaagatgaccaagggacatcaacgccagcgcaa
ttcgttcctaatgacgaattaggtgcggaccaagagtacccaagcgaaatcgtcagtgtt
cgagtggaaactcctgttgttgcaactcaaacaacagcggtaactgaaccggccgttaaa
actgctgacgtcgaaatagctgaaaccagttcaactccagctgttgaagctcctgctgtt
gttaaagtagaagcaaaagttgagcctcagcctcaagcaaatgacgttgcagcagttgaa
actaaacctgttgtgactaaaaccactgaaacgaaagcggaagagccaaaggctgctgac
gtaaaagttgaccttgcgtcaatcgttgaaactcaggtgaccagcgttactgctgaagcc
gtagtcgttgtagtcccatcagttgaaagctcagtgactaaatcagtagcagtacccaaa
actgaagcagctaaaaccgaaacacttgtcgagccaagtgttgcaccgagcgctgaagta
aaagaagccgtgaaagcaacagcctctgcgccaatggccagaccggctgctatcgctaag
cctcaagccacagtacaaacagctccaacaacaccgcaaatcacggatgcagttgttgtc
agcaagccgaaagcggccagccgctttggctctatggtgtcttcggatatgaccaagcct
gtcgttgaagtgagagaacaagtggcagtccctaaaggacgagagtatgagaatactgcg
aacgaagagtctactgccaaaatcaaactcgctaatggtgcagagtctgatatggcacgt
ccataa
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