Shewanella oncorhynchi: RA178_13940
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Entry
RA178_13940 CDS
T09381
Name
(GenBank) transcriptional repressor
KO
K09823
Fur family transcriptional regulator, zinc uptake regulator
Organism
sog
Shewanella oncorhynchi
Pathway
sog02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RA178_13940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sog03000
]
RA178_13940
Transcription factors [BR:
sog03000
]
Prokaryotic type
Helix-turn-helix
Fur family
RA178_13940
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FUR
WHD_RNase_R
Dimerisation
WHD_Rok
Motif
Other DBs
NCBI-ProteinID:
WMB71525
LinkDB
All DBs
Position
3087820..3088281
Genome browser
AA seq
153 aa
AA seq
DB search
MTGKNLDLLREVVKKCEEKGINLTSKRKKVLIVLQEHDVPLSAYEIADVLKQSLGESLPI
MSIYRMLDFLIQEQLVHKLLTVNKYIACHHVCDHHIHNQFLICNTCQKVTEIALPTALVE
QLQLNVSQAEFTLSSPQLELAGWCHECQQQHNS
NT seq
462 nt
NT seq
+upstream
nt +downstream
nt
atgacaggaaaaaatcttgatttactgcgtgaagtagtgaaaaagtgtgaagaaaaaggc
atcaatcttaccagtaagcgcaaaaaagtacttatcgtattacaggaacatgatgttcct
ttgtctgcctatgaaattgccgatgtgttaaaacaaagtttgggcgagagtttacccata
atgtctatctatcgcatgttggatttcttaatacaggaacaattagtgcataagttatta
acggtgaataagtatattgcctgccatcatgtatgtgatcatcacattcacaatcaattt
ttaatttgtaatacttgtcaaaaagtcacagagatagcattgcccactgctcttgttgaa
cagttacagttgaatgttagccaagcggaatttaccttatcgagcccacagcttgaatta
gcgggttggtgtcatgaatgtcagcagcaacataatagttaa
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