Shewanella oncorhynchi: RA178_13950
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Entry
RA178_13950 CDS
T09381
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RA178_13950 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_13950 (sbcB)
Enzymes [BR:
sog01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
RA178_13950 (sbcB)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RA178_13950 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RA178_13950 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RA178_13950 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WMB71527
UniProt:
A0AA50Q459
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All DBs
Position
3089012..3090430
Genome browser
AA seq
472 aa
AA seq
DB search
MKMKDDKAGSIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQATDYLPS
PEAILITGITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNF
IDPYAREWQNGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKA
HDAMSDVYATIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARN
GCATLISPVAHHPTNKNAVICVNLAMDLTPLFELDVEQIKTRMYTSRADLAEDELPIAVK
QIHLNKCPFITSAKILSDEHAVRLGIDKEFAREQYKRLKRHPELREKLALLFEHDDSRAT
TDPDLMLYSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELL
DDTESQRWREFCQSRLADQDYVLKLENLLQETQADETKQKLLAALCHYLREL
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaaagacgataaagcagggtcgattttttggcacgactatgaaacatttgga
gcgaacccagcgaaagacagaccctcgcaatttgctggtattcgcacggatttagatctc
aatatcatcggcgagcctgagacattctattgtaagcaagccactgattatttgccgtct
ccggaagcaatattaatcacagggatcactccacagttagctaatttaaaaggcatccct
gaaactgagtttatgggacgaattcaagcgctatttagccaaccaaacacttgtgttgca
ggttataactcactgcgttttgacgatgaagtgacccgttatggcttttatcggaacttt
atcgatccctatgcccgtgaatggcaaaatggcaactctcgttgggatatcattgattta
gtgcgcgcttgttatgcatttaggcccgaaggtattaactggccgacaaaggaagatggc
tctccgagttttaagctagaacatctgacccaagcgaatggtttaagccatgagaaagcc
catgatgctatgtctgatgtgtatgcgaccatcgctatggcaaaactcattcgcgagaaa
cagcctaagttatatcagtactattttgacctgcgccgtaagcaagcggtgagcgatcaa
atcgatgtgctcaatatgcagcctttggttcacgtaagctctaaaattagtgcgcgcaat
ggttgtgcaacgttaatttcacccgtagcgcaccatccaactaacaaaaatgccgttatt
tgcgttaatttagccatggatttaacaccgctattcgagctagatgtcgagcaaattaaa
acgcgcatgtatacgtcaagggctgatcttgccgaagatgaattacctattgcagtaaaa
caaattcatcttaataagtgcccttttatcacctcggcaaaaatcctcagtgatgagcat
gccgttcgtttaggcatagataaagaatttgccagagagcaatataaacgcctaaaacgt
cacccagaattacgcgaaaaactggcgctattatttgagcacgatgacagcagagcgacc
acagatcccgatttgatgctgtattctggtgggttctttagccaagctgataaagcaaaa
atggaaatcatccgtcataccctaccgcaaaatctagcggcgttagatttgcagtttgat
gatccacgtattcctgagatgctgtttcgttaccgcgcccgtaattaccctgaactactc
gatgatacagagtcgcagcgctggcgtgaattctgtcaaagtcgcttagccgatcaagac
tacgtacttaaattagaaaatttgctacaagaaacacaagcggatgagactaagcaaaag
ctacttgctgccctttgtcattatttgcgtgaactttaa
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