Shewanella oncorhynchi: RA178_14010
Help
Entry
RA178_14010 CDS
T09381
Symbol
msbA
Name
(GenBank) lipid A export permease/ATP-binding protein MsbA
KO
K11085
ATP-binding cassette, subfamily B, bacterial MsbA [EC:
7.5.2.6
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
RA178_14010 (msbA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sog02000
]
RA178_14010 (msbA)
Enzymes [BR:
sog01000
]
7. Translocases
7.5 Catalysing the translocation of carbohydrates and their derivatives
7.5.2 Linked to the hydrolysis of a nucleoside triphosphate
7.5.2.6 ABC-type lipid A-core oligosaccharide transporter
RA178_14010 (msbA)
Transporters [BR:
sog02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
RA178_14010 (msbA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_29
AAA_22
RsgA_GTPase
DEAD
ABC_ATPase
nSTAND3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WMB71538
UniProt:
A0AA50KAS5
LinkDB
All DBs
Position
complement(3100917..3102725)
Genome browser
AA seq
602 aa
AA seq
DB search
MTTSPKDEMWTVFKRLLGYIKQMKGMFMLSVAGLIIYGLVDAAFIAFIGPFIDKGFSGGA
PAAVTNGIALPTSEGFHANNDVLMMAPLVVIVMFSLRGFANFVSTYGISYMSARLIMDMR
QQVFEHYLSLPVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDSVTVFGMLVLMF
YNSWKLSLCILVIGPIMGMVIAVVSRRFRKVSKQIQTAMGGVSATTEQMIKGHKNVLAFG
GQETEATRFAKVNDQNRHQNMKLAVAQAISQPLIMIIGSFALAFVLYAASLDSMKADLTA
GTFATILGAMMAMLQPIKNLTRVNAEFQRGIAACTTVFELLDTLPESDTGTYTVERAKGH
LRFDNVCFTYDSQDRRALENVDFEVKPGQTLALVGRSGSGKSTIASLVTRFYTGLESGDI
LLDDVSIYDYSLKSLRNQVALVSQQVTLFNDTIANNIAYAYPGEATREQIIEAATLAYAM
EFIDQLPQGLDTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQ
KGLDNLRQNRTSVVIAHRLSTIESADQILVVDQGRIVERGTHQSLLELDGMYAKLYQMQF
GS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatctcctaaagacgaaatgtggacagttttcaaacgattactgggctatata
aaacagatgaaaggcatgtttatgctttcagttgcgggattaattatttatggtctcgtc
gatgccgcctttatcgctttcatcggcccctttattgataagggtttctccggcggcgca
cctgctgcggtgaccaacggcatcgcattgccaaccagtgaaggtttccacgcgaacaac
gacgtgctaatgatggcgccgcttgtggttatcgtcatgttttccctgcgcggttttgcc
aactttgtctcgacctacggcatttcatacatgagtgcgcgtttgatcatggacatgcgt
cagcaagtgtttgagcattatctgagcctgcctgtcagttatatggataaggaaaatacc
ggtaacttgatctcaaaagtgacttttgatactgagcaaatcgctcgagcatcgggaagt
gctttgatttcaatcgtccgcgatagtgtgactgtgtttggtatgctggtgctgatgttc
tataactcttggaagctatccctctgtattcttgtgattggtcctatcatgggcatggtc
attgcggtggttagtcgtcgtttccgtaaggtctctaagcaaattcaaacagccatgggc
ggggtgagtgcgactacggagcaaatgattaaaggccataaaaacgtattggcctttggt
ggacaggaaacagaagcaacccgttttgctaaagtaaacgatcaaaaccgccatcaaaat
atgaagttagctgtggcacaagccattagtcagcctctgatcatgattattggttcattc
gccttagcctttgtactttatgcggcaagcttagacagcatgaaagccgatcttaccgcg
ggtactttcgcgacgattcttggtgccatgatggccatgttacagccaatcaaaaactta
acccgagtgaatgccgaatttcaacggggtattgcggcttgtaccacagtgtttgaatta
ctggatacgctgcctgagtcagatacgggaacttatactgttgagcgtgctaagggtcat
ctacgttttgataatgtgtgttttacctatgacagccaagatcgtcgtgctcttgagaat
gtcgattttgaagtcaaacccgggcaaaccttagccttagttggacgttctggctcaggt
aagtcgactattgcgagtttagtgacccgtttttatacgggccttgaatccggcgatatt
ctgcttgatgacgtcagcatctacgattactcgctaaaatcgctgcgtaatcaagtggca
ctggtatcgcaacaggtgaccttgttcaatgacacgatagccaataacatcgcttacgcc
tacccaggtgaagccactcgtgagcagatcattgaagctgcgaccttggcctatgcgatg
gagtttattgatcagctgccccaaggccttgatacccaagtgggtgagaatggcgtgtta
ttgtccggtggtcaaagacagcggattgcgattgcgcgcgctatgttgcgtgatgcgcct
gtgttgatcctcgatgaagcgacctccgcactggatactgagtcagaaaaagccattcaa
aaagggttagataacctcagacaaaaccgcacatctgtagtgattgcccacaggttgtcg
accatcgagagtgccgatcaaattttagtagtcgatcaggggcggattgtcgagcgcggg
acgcaccaatcactattggaattagatgggatgtacgccaaattataccaaatgcaattt
ggtagttag
DBGET
integrated database retrieval system
