Shewanella oncorhynchi: RA178_15070
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Entry
RA178_15070 CDS
T09381
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sog
Shewanella oncorhynchi
Pathway
sog03030
DNA replication
sog03430
Mismatch repair
sog03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RA178_15070 (dnaE)
03430 Mismatch repair
RA178_15070 (dnaE)
03440 Homologous recombination
RA178_15070 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sog03032
]
RA178_15070 (dnaE)
03400 DNA repair and recombination proteins [BR:
sog03400
]
RA178_15070 (dnaE)
Enzymes [BR:
sog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RA178_15070 (dnaE)
DNA replication proteins [BR:
sog03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RA178_15070 (dnaE)
DNA repair and recombination proteins [BR:
sog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RA178_15070 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF8227
Motif
Other DBs
NCBI-ProteinID:
WMB71736
UniProt:
A0AA50Q529
LinkDB
All DBs
Position
complement(3341555..3345028)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMTDGVAKVKPILAQVEAQGMAAVALTDQNNFCGLVKFYSGCHGA
GIKPIIGADFWMQVPGFEGELCALTIIAMNNVGYQNLTQIISQAYLRGQVAGRVVIDQEW
LLTYNEGILLLSGAKEGDLGKALLKGNGTQVESLCDFYQTHFTDRYFLELIRTGRPDEER
YLHMAVALAQEKGIPVVATNQVVFLKPEDFDAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALANSVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDFLVDCSKKGL
EERLEFLFPNPEVRAEKRGEYDERLDIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVEVKNGRPPVRIEAIPLTDAASFRLL
QKYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAINNGVDGDLSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPS
QFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDTLGPHRASMMAT
LPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTAKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEIMLFTEAFEKFNHLLEKDRILICEGEVSYDDFAGGNRMTARNIIDISEARSHFAK
ALEIDMDGSELTPSALDTFEQALSPWRNGAVPVVINYTQAQAKGQFRLADAWRVNPTDDL
MLSLESLLGPNKVRILF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttctctatgaccgatggc
gtggccaaggtcaagcctattttggcgcaggtggaagcgcagggaatggccgcggtcgcc
ttgactgaccaaaataacttttgtggtttggtgaagttttacagtggttgccatggtgcg
gggatcaagccgattattggtgccgatttttggatgcaagtgcccggatttgaaggcgaa
ttatgcgccttaaccattattgcgatgaacaatgtcggttatcaaaatctgacccaaatc
atcagtcaagcctatttgcgtggccaagtggccggccgtgtagtgatagaccaagagtgg
ttactcacttataacgaaggcattttgctgttatcgggcgccaaagaaggcgatctgggt
aaggcactgctcaagggcaatggcacacaagtcgaatctttatgcgacttttatcagacc
catttcactgaccgttatttcctcgagcttatccgcacaggtcgccccgatgaagagcgt
tatctgcatatggcggtggccttagcgcaggagaagggcatccctgttgtggcgaccaat
caggtggtgtttcttaaacccgaagattttgatgcccacgaaattcgggtggcaattcac
gatggctttacccttgcagatcctcgtcgacctaaaaaatacagtgaacagcagtatttg
cgtagcgaagaggaaatgtgtgaactattcgccgacattcctgcggcgttggcgaacagt
gtcgaaatcgctaaacgctgtaatgtaacgatccgtttgtacgaatatttcctgcccaac
ttcccgacgggtgatatgtccatcgaagactttctggtcgattgttcgaagaagggcctt
gaagagcggctcgaattcttgttccccaatcctgaggtgcgcgccgagaaacgcggcgaa
tacgatgagcgcctcgacattgaacttaaagtgatcaaccagatggggttccccggttac
ttcttgatcgtaatggagttcatccaatggggtaaagataacggtattccagtagggcct
ggtcgtggctcgggcgcgggttcactcgtggcctatgcgcttaagattaccgacttagac
ccattggaatttgatttactgttcgagcgattcctcaaccctgagcgggtttctatgccc
gactttgacgtcgacttttgcatggatagacgtgatgaagtgatcgaccatgtggccgaa
ttgtacggtcgcgaagcagtatcgcaaatcatcactttcgggactatggcggcaaaagcg
gttattcgcgatgttggccgtgtgctcggtcatccctatggcttcgttgaccgaatttct
aaactcattccaccagaacctgggatgaccctggcaaaagcgtttgaggtcgagccagcc
ctgcaagaatcctatgatgccgatgaagacgtaaaagatctgatcgacatgtgtcgcaag
ctcgaaggtgtgacgcgtaacgcgggtaaacacgcgggtggtgtggtgattgcaccaact
aaaattaccgattttgcgccgctctattgcgacgctgaaggtaaaaatccagtaacacaa
ttcgataaaaacgacgtcgaaaccgcaggtttagttaaattcgactttttgggtttacgt
actttgacaatcatcgactgggcactggagatggtgaacaaggtcgaggtcaaaaacggt
cgcccacctgtgcgtatcgaagcgattccgttaacggatgcggcatctttccgcttgttg
caaaaatatgaaaccacagcggtattccagttggaatcccgcggtatgaaggatttgatt
aaacgtctgcaacccgactgtttcgaagacatgatcgcactggtggcattgttccgccct
gggcctttgcaatcgggcatggtagataacttcatcgagcgtaagcatgggcgcgaggaa
gtatcgtatcccgattctcagtaccagcatgaatccttaaaagaactgttatcaccgacc
tacggcattattctgtatcaagagcaagtgatgcagattgcacaggtgttatcgggttac
acccttggcggcgccgacatgttgcgccgtgctatgggtaagaaaaagcccgaagagatg
gccaagcagcgcagtatctttaaagagggcgcaatcaataacggtgtcgacggcgacttg
tcgatgaagatcttcgacttagtggaaaagttcgccggctacggttttaacaaatctcac
tcagccgcctatgcgcttgtgtcttatcagacattatggctaaaaacccattatccttcg
cagtttatggcggcggtaatgtcggccgatatggacaacacagataaaattgtgactttg
gtcgatgaatgtgagcgtatggggctaccgctcattcctccggatgtgaacaaaggcttg
ttcaaatttaccgtcgatgatgatttgcgcatcgtttatggcattggcgccattaaaggc
gtgggtgaaggtccagttgaatcgattttagaggcgcgtaaagatggccccttcgtggat
ctattcgatttctgtgcccgtattgatttgaaaaagctcaataagcgcgtgattgaaaag
ctgatctgcgcgggcgcactcgatactcttgggccgcatcgtgcgtctatgatggcaacc
ttgcccgaagcgattcgcgctgccgatcaacatgcaaaagcagaggcgattggccaacac
gatatgtttggtttgctcaacagtgaacccgaagacagtaagcagcagtttgtcgaatgt
accccatggccagataaaatttggctcgaaggcgagcgcgaaaccctaggcttgtatttg
accggtcatccgatcaatcaatatttaaaagagcttaagcattacacgtccggtcgtttg
aaagatgtgcatcccaccgaacgcggtaaaaccgctaaggctgcgggtttagtggtggca
acgcgagtgatgctgaccaaacgcggctcgaaaatgggtctgttgacgctcgatgataag
agcgcacgtcttgaaatcatgttgtttaccgaagcctttgaaaagtttaatcatctgctg
gagaaagaccgcatcctcatttgtgaaggtgaggtgagttacgatgattttgccggcggc
aaccgtatgacggcgcgtaacatcatagatatcagtgaggcgcgcagccactttgccaaa
gcgctggaaattgatatggatggcagcgagttaacgccatcggcgttagacactttcgag
caagccctaagcccgtggcgtaacggcgccgtgcctgtggtgatcaattacactcaagct
caagccaaaggtcagtttaggttagccgatgcttggcgagtgaatccgaccgatgacttg
atgctctcgctcgaatcgctcctcgggccaaacaaggtgagaattttattctaa
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