Shewanella oncorhynchi: RA178_15475
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Entry
RA178_15475 CDS
T09381
Name
(GenBank) RsmB/NOP family class I SAM-dependent RNA methyltransferase
KO
K03500
16S rRNA (cytosine967-C5)-methyltransferase [EC:
2.1.1.176
]
Organism
sog
Shewanella oncorhynchi
Brite
KEGG Orthology (KO) [BR:
sog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sog03009
]
RA178_15475
Enzymes [BR:
sog01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.176 16S rRNA (cytosine967-C5)-methyltransferase
RA178_15475
Ribosome biogenesis [BR:
sog03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
RA178_15475
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Methyltr_RsmB-F
Methyltransf_31
RsmF-B_ferredox
Ubie_methyltran
DUF6174
Motif
Other DBs
NCBI-ProteinID:
WMB71813
LinkDB
All DBs
Position
3444693..3446084
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AA seq
463 aa
AA seq
DB search
MGNPSSFSSGKASNSNTSSALNAEASTPAQKRALSYASTIKQLFDEIQSSKMPADRILAN
YFREHKKHGSKDRKVIRESLFSLFRWWGWFQRIGDQQESATYFASLSASALLEAHAWQDI
ASAWHELSQSPIDYQQAQALTVESLDDKLALIQYLFPATEFKSQDLLPDWFWQVCPVDTA
QQTQLIAAMSSRPPIWGRAQGITSQDAATQLQALGIDASYGHYFNDAINLGSKSMNLNEI
ALYKDGNIEIQDLASQVIGQICAPEPDAHWWDACSGAGGKTLQLRSLMLTKAADTQTPST
GSIISSDIRSNALEELTKRAQRAHFNGISVARWKSDALPVPADHFDGVLVDAPCSCTGTW
RRNPDMRWLDSVEAVADKAALQLDILSRSSRAVKAGGVLVYATCSLSPLENQDVVTAFLK
QHPEFTLTPIRHPFTGEQTEMLTVWPFEANSDGMFVARMLRVK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggtaatccaagcagcttctcttccggtaaagcatccaactcaaacacatcgtcagca
ttaaatgcagaggcgagcaccccagcgcaaaaacgtgcgctcagttacgccagtacaatt
aagcaattattcgatgaaattcaaagcagtaaaatgcccgccgaccgtattctggccaac
tactttagagaacataaaaaacacggctcgaaggatcgtaaagtcatccgtgaatcctta
tttagtctatttcgttggtggggttggtttcagcgaataggcgatcaacaagaatcagcg
acttattttgccagcctaagcgccagtgccctattggaagctcacgcatggcaagatatt
gctagcgcttggcatgagttatcacaatcgcccatcgattatcagcaagctcaagcactt
accgttgaaagtctcgacgacaaattggcactgatacagtatttatttcccgcgactgag
tttaaatcacaggatttattacccgactggttctggcaagtgtgccctgtagatacggcg
cagcaaacccaattaattgctgctatgtctagtcgcccaccaatttggggccgcgcacag
gggatcactagccaagatgcggcgacacaactgcaagcgcttggcatcgatgctagttat
ggtcattactttaacgatgcgattaaccttggcagtaagagtatgaatcttaatgaaatc
gccctgtataaagacggtaacattgagatccaagatttggcttcacaggtcatagggcaa
atttgcgcgccagaacccgatgcccattggtgggatgcttgcagtggtgctggcggaaaa
accctgcaactgcgctctttgatgctgaccaaggctgctgatactcaaacaccctctacg
ggcagcattatatcgtcagatattcgctccaatgccctagaagaactcactaaacgcgcc
caaagagctcactttaacggtattagcgttgcccgttggaagagcgatgccctgccggta
cctgcggatcatttcgacggtgtgttagtcgatgccccgtgcagttgcactgggacttgg
cgacgtaatcccgatatgcgttggttggatagtgttgaggccgtggccgataaagccgcg
ttacagctcgatattttaagccgcagtagccgcgcagttaaagcgggcggcgtactcgtt
tacgccacgtgttccttgtcgccgctcgagaaccaagacgtggtgacggcgtttttaaag
caacatccagagttcacgctcacgccgatacgccatccttttacgggtgaacaaacagaa
atgttgaccgtttggccctttgaagctaatagtgatggtatgtttgtcgcgcgtatgctg
cgcgtcaagtaa
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